The complete chloroplast genome sequence of Euphorbia lathyris L. (Euphorbiaceae)

被引：5
作者：
Ma, Wenqi [1 ]
Lv, Chaogeng [1 ]
Jiang, Daiquan [1 ]
Kang, Chuanzhi [1 ]
Zhao, Dan [2 ]
机构：
[1] China Acad Chinese Med Sci, Natl Resource Ctr Chinese Meteria Med, Beijing 100053, Peoples R China
[2] Guizhou Univ Tradit Chinese Med, Sch Pharm, Guiyang 550002, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
基金：
中国国家自然科学基金;
关键词：
Euphorbia lathyris; chloroplast genome; phylogenetic relationship; EVOLUTIONARY; ALGORITHM;
D O I：
10.1080/23802359.2020.1832601
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Euphorbia lathyris L. is a well-known bioenergy plant cultivated in many parts of the world. In this study, we sequenced the complete chloroplast (cp) genome sequence of E. lathyris to investigate its phylogenetic relationship in the family Euphorbiaceae. The cp genome was 163,738 bp in length, consisting of a pair of inverted repeats (IRa and IRb: 26,837 bp) separated by a large single-copy region (LSC: 91,783 bp) and a small single-copy region (SSC: 18,281 bp). The GC content of whole cp genome is 35.6%. Annotation showed the presence of 113 unique genes with 79 protein-coding genes, four tRNA genes, and 30 rRNA genes. Phylogenetic analysis indicated that E. lathyris was in the basal position of subgen. Esula, closely related to sect. Esula and sect. Helioscopiae.
引用
收藏
页码：3678 / 3680
页数：3
相关论文
共 10 条
  • [1] ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
  • [2] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [3] Phylogenetic Resolution in Juglans Based on Complete Chloroplast Genomes and Nuclear DNA Sequences
    Dong, Wenpan
    Xu, Chao
    Li, Wenqing
    Xie, Xiaoman
    Lu, Yizeng
    Liu, Yanlei
    Jin, Xiaobai
    Suo, Zhili
    [J]. FRONTIERS IN PLANT SCIENCE, 2017, 8
  • [4] Govaerts R, 2000, WORLD CHECKLIST BIBL
  • [5] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
    Lam-Tung Nguyen
    Schmidt, Heiko A.
    von Haeseler, Arndt
    Bui Quang Minh
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) : 268 - 274
  • [6] [李金璐 Li Jinlu], 2013, [植物学报, Chinese Bulletin of Botany], V48, P72
  • [7] Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species
    Sun, Jiahui
    Wang, Yiheng
    Liu, Yanlei
    Xu, Chao
    Yuan, Qingjun
    Guo, Lanping
    Huang, Luqi
    [J]. SCIENTIFIC REPORTS, 2020, 10 (01)
  • [8] Wu ZY, 1994, FLORA CHINA, V44
  • [9] Automatic annotation of organellar genomes with DOGMA
    Wyman, SK
    Jansen, RK
    Boore, JL
    [J]. BIOINFORMATICS, 2004, 20 (17) : 3252 - 3255
  • [10] PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
    Zhang, Dong
    Gao, Fangluan
    Jakovlic, Ivan
    Zou, Hong
    Zhang, Jin
    Li, Wen X.
    Wang, Gui T.
    [J]. MOLECULAR ECOLOGY RESOURCES, 2020, 20 (01) : 348 - 355
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