Characterization of Flavobacterium aquimarinum sp nov., a halotolerant bacterium isolated from seawater

被引:7
作者
Kristyanto, Sylvia [1 ]
Tuan Manh Nguyen [1 ,2 ]
Chaudhary, Dhiraj Kumar [1 ]
Lee, Sang-Seob [1 ]
Kim, Jaisoo [1 ]
机构
[1] Kyonggi Univ, Dept Life Sci, Coll Nat Sci & Engn, Suwon 16227, South Korea
[2] Thai Nguyen Univ Agr & Forestry, Quyet Thang, Thai Nguyen, Vietnam
基金
新加坡国家研究基金会;
关键词
Flavobacterium aquimarinum sp nov; seawater; halotolerant; Flavobacteriaceae; bacteroidetes; WATER TREATMENT-PLANT; EMENDED DESCRIPTION; GENUS FLAVOBACTERIUM; FAMILY FLAVOBACTERIACEAE; DEOXYRIBONUCLEIC-ACID; FRESH-WATER; SOIL; DONGTANENSE; SEQUENCES; TREES;
D O I
10.1007/s12275-018-7454-3
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A novel, aerobic, Gram-stain-negative, non-motile, non-spore forming, rod-shaped bacterium, designated strain Dol 15-39(T), was isolated from a seawater sample near Geoje Island in the South Sea, Republic of Korea. The strain was found to be oxidase-negative and catalase-positive. The isolate was observed to grow at temperatures from 4 to 37 degrees C, at salinities of up to 7%, and at pH levels from 6 to 9; moreover, it was not able to degrade starch, DNA, esculin, or tyrosine. Phylogenetic analysis based on 16S rRNA gene sequences showed that Dol 15-39(T) was most closely related to Flavobacterium jumunjinense HME7102(T) with a sequence similarity of 97.3%. However, the levels of DNA-DNA relatedness between Dol 15-39(T) and the most closely related species were much lower than 70%, confirming that they represented distinct genomic species. The genomic DNA G + C content of Dol 15-39(T) was calculated to be 32.6 mol%. MK-6 was the predominant respiratory quinine, while iso-C-15:0 (25.0%), iso-C-15:1 G (17.0%), and iso-C-17:0 3-OH (10.4%) were the major cellular fatty acids. Phosphatidylethanolamine was identified as a major polar lipid, while various unidentified aminolipids and polar lipids were also detected. Based on polyphasic taxonomic data, Dol 15-39(T) represents a novel species of the genus Flavobacterium, for which the name F. aquimarinum sp. nov. is proposed. The type strain is accessible under the culture collection numbers (KEMB 9005-617(T) = JCM 31930(T)).
引用
收藏
页码:317 / 323
页数:7
相关论文
共 44 条
[31]   THE NEIGHBOR-JOINING METHOD - A NEW METHOD FOR RECONSTRUCTING PHYLOGENETIC TREES [J].
SAITOU, N ;
NEI, M .
MOLECULAR BIOLOGY AND EVOLUTION, 1987, 4 (04) :406-425
[32]  
Sasser M., 1990, IDENTIFICATION BACTE, P1
[33]   Flavobacterium verecundum sp nov., isolated from a freshwater river [J].
Sheu, Shih-Yi ;
Chen, Yi-Ling ;
Chen, Wen-Ming .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :3337-3344
[34]  
Smibert Robert M., 1994, P607
[35]   OXIDASE REACTION AS A TAXONOMIC TOOL [J].
STEEL, KJ .
JOURNAL OF GENERAL MICROBIOLOGY, 1961, 25 (02) :297-+
[36]   The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools [J].
Thompson, JD ;
Gibson, TJ ;
Plewniak, F ;
Jeanmougin, F ;
Higgins, DG .
NUCLEIC ACIDS RESEARCH, 1997, 25 (24) :4876-4882
[37]  
Tindall BJ, 2007, METHODS GEN MOL MICR, V3, P330, DOI DOI 10.1128/9781555817497.CH15
[38]   A rapid and simple method for identifying bacterial polar lipid components in wet biomass [J].
Tuan Manh Nguyen ;
Kim, Jaisoo .
JOURNAL OF MICROBIOLOGY, 2017, 55 (08) :635-639
[40]   REPORT OF THE AD-HOC-COMMITTEE ON RECONCILIATION OF APPROACHES TO BACTERIAL SYSTEMATICS [J].
WAYNE, LG ;
BRENNER, DJ ;
COLWELL, RR ;
GRIMONT, PAD ;
KANDLER, O ;
KRICHEVSKY, MI ;
MOORE, LH ;
MOORE, WEC ;
MURRAY, RGE ;
STACKEBRANDT, E ;
STARR, MP ;
TRUPER, HG .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1987, 37 (04) :463-464