Genetic variations in colorectal cancer risk and clinical outcome

被引:37
作者
Zhang, Kejin [1 ,2 ]
Civan, Jesse [3 ]
Mukherjee, Sushmita [1 ]
Patel, Fenil [1 ]
Yang, Hushan [1 ]
机构
[1] Thomas Jefferson Univ, Kimmel Canc Ctr, Dept Med Oncol, Div Populat Sci, Philadelphia, PA 19107 USA
[2] NW Univ Xian, Coll Life Sci, Xian 710069, Shaanxi Provinc, Peoples R China
[3] Thomas Jefferson Univ, Dept Med, Div Gastroenterol & Hepatol, Philadelphia, PA 19107 USA
关键词
Colorectal cancer; Genome-wide association study; Single nucleotide polymorphism; Signal transduction pathways; Cell cycle control; Gene desert; Genome instability; GENOME-WIDE ASSOCIATION; REPLICATION PROTEIN-A; STRANDED-DNA-BINDING; CLEAR-CELL SARCOMA; SUSCEPTIBILITY LOCI; COLON-CANCER; MICROSATELLITE INSTABILITY; CHROMOSOMAL INSTABILITY; PROGNOSTIC MARKERS; SIGNALING PATHWAYS;
D O I
10.3748/wjg.v20.i15.4167
中图分类号
R57 [消化系及腹部疾病];
学科分类号
摘要
Colorectal cancer (CRC) has an apparent hereditary component, as evidenced by the well-characterized genetic syndromes and family history associated with the increased risk of this disease. However, in a large fraction of CRC cases, no known genetic syndrome or family history can be identified, suggesting the presence of "missing heritability" in CRC etiology. The genome-wide association study (GWAS) platform has led to the identification of multiple replicable common genetic variants associated with CRC risk. These newly discovered genetic variations might account for a portion of the missing heritability. Here, we summarize the recent GWASs related to newly identified genetic variants associated with CRC risk and clinical outcome. The findings from these studies suggest that there is a lack of understanding of the mechanism of many single nucleotide polymorphisms (SNPs) that are associated with CRC. In addition, the utility of SNPs as prognostic markers of CRC in clinical settings remains to be further assessed. Finally, the currently validated SNPs explain only a small fraction of total heritability in complex-trait diseases like CRC. Thus, the "missing heritability" still needs to be explored further. Future epidemiological and functional investigations of these variants will add to our understanding of CRC pathogenesis, and may ultimately lead to individualized strategies for prevention and treatment of CRC. (C) 2014 Baishideng Publishing Group Co., Limited. All rights reserved.
引用
收藏
页码:4167 / 4177
页数:11
相关论文
共 73 条
[51]   Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21 [J].
Tenesa, Albert ;
Farrington, Susan M. ;
Prendergast, James G. D. ;
Porteous, Mary E. ;
Walker, Marion ;
Haq, Naila ;
Barnetson, Rebecca A. ;
Theodoratou, Evropi ;
Cetnarskyj, Roseanne ;
Cartwright, Nicola ;
Semple, Colin ;
Clark, Andrew J. ;
Reid, Fiona J. L. ;
Smith, Lorna A. ;
Kavoussanakis, Kostas ;
Koessler, Thibaud ;
Pharoah, Paul D. P. ;
Buch, Stephan ;
Schafmayer, Clemens ;
Tepel, Juergen ;
Schreiber, Stefan ;
Voelzke, Henry ;
Schmidt, Carsten O. ;
Hampe, Jochen ;
Chang-Claude, Jenny ;
Hoffmeister, Michael ;
Brenner, Hermann ;
Wilkening, Stefan ;
Canzian, Federico ;
Capella, Gabriel ;
Moreno, Victor ;
Deary, Ian J. ;
Starr, John M. ;
Tomlinson, Ian P. M. ;
Kemp, Zoe ;
Howarth, Kimberley ;
Carvajal-Carmona, Luis ;
Webb, Emily ;
Broderick, Peter ;
Vijayakrishnan, Jayaram ;
Houlston, Richard S. ;
Rennert, Gad ;
Ballinger, Dennis ;
Rozek, Laura ;
Gruber, Stephen B. ;
Matsuda, Koichi ;
Kidokoro, Tomohide ;
Nakamura, Yusuke ;
Zanke, Brent W. ;
Greenwood, Celia M. T. .
NATURE GENETICS, 2008, 40 (05) :631-637
[52]   Genetic and epigenetic changes of components affecting the WNT pathway in colorectal carcinomas stratified by microsatellite instability [J].
Thorstensen, L ;
Lind, GE ;
Lovig, T ;
Diep, CB ;
Meling, GI ;
Rognum, TO ;
Lothe, RA .
NEOPLASIA, 2005, 7 (02) :99-108
[53]   A genome-wide association scan of tag SNPs identifies a susceptibility variant for colorectal cancer at 8q24.21 [J].
Tomlinson, Ian ;
Webb, Emily ;
Carvajal-Carmona, Luis ;
Broderick, Peter ;
Kemp, Zoe ;
Spain, Sarah ;
Penegar, Steven ;
Chandler, Ian ;
Gorman, Maggie ;
Wood, Wendy ;
Barclay, Ella ;
Lubbe, Steven ;
Martin, Lynn ;
Sellick, Gabrielle ;
Jaeger, Emma ;
Hubner, Richard ;
Wild, Ruth ;
Rowan, Andrew ;
Fielding, Sarah ;
Howarth, Kimberley ;
Silver, Andrew ;
Atkin, Wendy ;
Muir, Kenneth ;
Logan, Richard ;
Kerr, David ;
Johnstone, Elaine ;
Sieber, Oliver ;
Gray, Richard ;
Thomas, Huw ;
Peto, Julian ;
Cazier, Baptiste ;
Houlston, Richard .
NATURE GENETICS, 2007, 39 (08) :984-988
[54]   A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3 [J].
Tomlinson, Ian P. M. ;
Webb, Emily ;
Carvajal-Carmona, Luis ;
Broderick, Peter ;
Howarth, Kimberley ;
Pittman, Alan M. ;
Spain, Sarah ;
Lubbe, Steven ;
Walther, Axel ;
Sullivan, Kate ;
Jaeger, Emma ;
Fielding, Sarah ;
Rowan, Andrew ;
Vijayakrishnan, Jayaram ;
Domingo, Enric ;
Chandler, Ian ;
Kemp, Zoe ;
Qureshi, Mobshra ;
Farrington, Susan M. ;
Tenesa, Albert ;
Prendergast, James G. D. ;
Barnetson, Rebecca A. ;
Penegar, Steven ;
Barclay, Ella ;
Wood, Wendy ;
Martin, Lynn ;
Gorman, Maggie ;
Thomas, Huw ;
Peto, Julian ;
Bishop, D. Timothy ;
Gray, Richard ;
Maher, Eamonn R. ;
Lucassen, Anneke ;
Kerr, David ;
Evans, D. Gareth R. ;
Schafmayer, Clemens ;
Buch, Stephan ;
Voelzke, Henry ;
Hampe, Jochen ;
Schreiber, Stefan ;
John, Ulrich ;
Koessler, Thibaud ;
Pharoah, Paul ;
van Wezel, Tom ;
Morreau, Hans ;
Wijnen, Juul T. ;
Hopper, John L. ;
Southey, Melissa C. ;
Giles, Graham G. ;
Severi, Gianluca .
NATURE GENETICS, 2008, 40 (05) :623-630
[55]   Multiple Common Susceptibility Variants near BMP Pathway Loci GREM1, BMP4, and BMP2 Explain Part of the Missing Heritability of Colorectal Cancer [J].
Tomlinson, Ian P. M. ;
Carvajal-Carmona, Luis G. ;
Dobbins, Sara E. ;
Tenesa, Albert ;
Jones, Angela M. ;
Howarth, Kimberley ;
Palles, Claire ;
Broderick, Peter ;
Jaeger, Emma E. M. ;
Farrington, Susan ;
Lewis, Annabelle ;
Prendergast, James G. D. ;
Pittman, Alan M. ;
Theodoratou, Evropi ;
Olver, Bianca ;
Walker, Marion ;
Penegar, Steven ;
Barclay, Ella ;
Whiffin, Nicola ;
Martin, Lynn ;
Ballereau, Stephane ;
Lloyd, Amy ;
Gorman, Maggie ;
Lubbe, Steven ;
Howie, Bryan ;
Marchini, Jonathan ;
Ruiz-Ponte, Clara ;
Fernandez-Rozadilla, Ceres ;
Castells, Antoni ;
Carracedo, Angel ;
Castellvi-Bel, Sergi ;
Duggan, David ;
Conti, David ;
Cazier, Jean-Baptiste ;
Campbell, Harry ;
Sieber, Oliver ;
Lipton, Lara ;
Gibbs, Peter ;
Martin, Nicholas G. ;
Montgomery, Grant W. ;
Young, Joanne ;
Baird, Paul N. ;
Gallinger, Steven ;
Newcomb, Polly ;
Hopper, John ;
Jenkins, Mark A. ;
Aaltonen, Lauri A. ;
Kerr, David J. ;
Cheadle, Jeremy ;
Pharoah, Paul .
PLOS GENETICS, 2011, 7 (06)
[56]   Laminin isoforms: biological roles and effects on the intracellular distribution of nuclear proteins in intestinal epithelial cells [J].
Turck, N ;
Gross, I ;
Gendry, P ;
Stutzmann, J ;
Freund, JN ;
Kedinger, M ;
Simon-Assmann, P ;
Launay, JF .
EXPERIMENTAL CELL RESEARCH, 2005, 303 (02) :494-503
[57]   Genome-wide association study identifies five new breast cancer susceptibility loci [J].
Turnbull, Clare ;
Ahmed, Shahana ;
Morrison, Jonathan ;
Pernet, David ;
Renwick, Anthony ;
Maranian, Mel ;
Seal, Sheila ;
Ghoussaini, Maya ;
Hines, Sarah ;
Healey, Catherine S. ;
Hughes, Deborah ;
Warren-Perry, Margaret ;
Tapper, William ;
Eccles, Diana ;
Evans, D. Gareth ;
Hooning, Maartje ;
Schutte, Mieke ;
van den Ouweland, Ans ;
Houlston, Richard ;
Ross, Gillian ;
Langford, Cordelia ;
Pharoah, Paul D. P. ;
Stratton, Michael R. ;
Dunning, Alison M. ;
Rahman, Nazneen ;
Easton, Douglas F. .
NATURE GENETICS, 2010, 42 (06) :504-U47
[58]   Colorectal Cancer Stem Cells [J].
Vaiopoulos, Aristides G. ;
Kostakis, Ioannis D. ;
Koutsilieris, Michael ;
Papavassiliou, Athanasios G. .
STEM CELLS, 2012, 30 (03) :363-371
[59]   Genome-wide association studies in common cancers what have we learnt? [J].
Varghese, Jajini Susan ;
Easton, Douglas F. .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2010, 20 (03) :201-209
[60]   Five Years of GWAS Discovery [J].
Visscher, Peter M. ;
Brown, Matthew A. ;
McCarthy, Mark I. ;
Yang, Jian .
AMERICAN JOURNAL OF HUMAN GENETICS, 2012, 90 (01) :7-24