Genetic variations in colorectal cancer risk and clinical outcome

被引:35
作者
Zhang, Kejin [1 ,2 ]
Civan, Jesse [3 ]
Mukherjee, Sushmita [1 ]
Patel, Fenil [1 ]
Yang, Hushan [1 ]
机构
[1] Thomas Jefferson Univ, Kimmel Canc Ctr, Dept Med Oncol, Div Populat Sci, Philadelphia, PA 19107 USA
[2] NW Univ Xian, Coll Life Sci, Xian 710069, Shaanxi Provinc, Peoples R China
[3] Thomas Jefferson Univ, Dept Med, Div Gastroenterol & Hepatol, Philadelphia, PA 19107 USA
关键词
Colorectal cancer; Genome-wide association study; Single nucleotide polymorphism; Signal transduction pathways; Cell cycle control; Gene desert; Genome instability; GENOME-WIDE ASSOCIATION; REPLICATION PROTEIN-A; STRANDED-DNA-BINDING; CLEAR-CELL SARCOMA; SUSCEPTIBILITY LOCI; COLON-CANCER; MICROSATELLITE INSTABILITY; CHROMOSOMAL INSTABILITY; PROGNOSTIC MARKERS; SIGNALING PATHWAYS;
D O I
10.3748/wjg.v20.i15.4167
中图分类号
R57 [消化系及腹部疾病];
学科分类号
摘要
Colorectal cancer (CRC) has an apparent hereditary component, as evidenced by the well-characterized genetic syndromes and family history associated with the increased risk of this disease. However, in a large fraction of CRC cases, no known genetic syndrome or family history can be identified, suggesting the presence of "missing heritability" in CRC etiology. The genome-wide association study (GWAS) platform has led to the identification of multiple replicable common genetic variants associated with CRC risk. These newly discovered genetic variations might account for a portion of the missing heritability. Here, we summarize the recent GWASs related to newly identified genetic variants associated with CRC risk and clinical outcome. The findings from these studies suggest that there is a lack of understanding of the mechanism of many single nucleotide polymorphisms (SNPs) that are associated with CRC. In addition, the utility of SNPs as prognostic markers of CRC in clinical settings remains to be further assessed. Finally, the currently validated SNPs explain only a small fraction of total heritability in complex-trait diseases like CRC. Thus, the "missing heritability" still needs to be explored further. Future epidemiological and functional investigations of these variants will add to our understanding of CRC pathogenesis, and may ultimately lead to individualized strategies for prevention and treatment of CRC. (C) 2014 Baishideng Publishing Group Co., Limited. All rights reserved.
引用
收藏
页码:4167 / 4177
页数:11
相关论文
共 73 条
  • [11] Shroom2 regulates contractility to control endothelial morphogenesis
    Farber, Matthew J.
    Rizaldy, Ryan
    Hildebrand, Jeffrey D.
    [J]. MOLECULAR BIOLOGY OF THE CELL, 2011, 22 (06) : 795 - 805
  • [12] A GENETIC MODEL FOR COLORECTAL TUMORIGENESIS
    FEARON, ER
    VOGELSTEIN, B
    [J]. CELL, 1990, 61 (05) : 759 - 767
  • [13] COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer
    Forbes, Simon A.
    Bindal, Nidhi
    Bamford, Sally
    Cole, Charlotte
    Kok, Chai Yin
    Beare, David
    Jia, Mingming
    Shepherd, Rebecca
    Leung, Kenric
    Menzies, Andrew
    Teague, Jon W.
    Campbell, Peter J.
    Stratton, Michael R.
    Futreal, P. Andrew
    [J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : D945 - D950
  • [14] Hereditary Colon Cancer Syndromes
    Gala, Manish
    Chung, Daniel C.
    [J]. SEMINARS IN ONCOLOGY, 2011, 38 (04) : 490 - 499
  • [15] Common Cancer Stem Cell Gene Variants Predict Colon Cancer Recurrence
    Gerger, Armin
    Zhang, Wu
    Yang, Dongyun
    Bohanes, Pierre
    Ning, Yan
    Winder, Thomas
    LaBonte, Melissa J.
    Wilson, Peter M.
    Benhaim, Leonor
    Paez, David
    El-Khoueiry, Rita
    El-Khoueiry, Anthony
    Kahn, Michael
    Lenz, Heinz-Josef
    [J]. CLINICAL CANCER RESEARCH, 2011, 17 (21) : 6934 - 6943
  • [16] Genome-wide association study identifies a second prostate cancer susceptibility variant at 8q24
    Gudmundsson, Julius
    Sulem, Patrick
    Manolescu, Andrei
    Amundadottir, Laufey T.
    Gudbjartsson, Daniel
    Helgason, Agnar
    Rafnar, Thorunn
    Bergthorsson, Jon T.
    Agnarsson, Bjarni A.
    Baker, Adam
    Sigurdsson, Asgeir
    Benediktsdottir, Kristrun R.
    Jakobsdottir, Margret
    Xu, Jianfeng
    Blondal, Thorarinn
    Kostic, Jelena
    Sun, Jielin
    Ghosh, Shyamali
    Stacey, Simon N.
    Mouy, Magali
    Saemundsdottir, Jona
    Backman, Valgerdur M.
    Kristjansson, Kristleifur
    Tres, Alejandro
    Partin, Alan W.
    Albers-Akkers, Marjo T.
    Marcos, Javier Godino-Ivan
    Walsh, Patrick C.
    Swinkels, Dorine W.
    Navarrete, Sebastian
    Isaacs, Sarah D.
    Aben, Katja K.
    Graif, Theresa
    Cashy, John
    Ruiz-Echarri, Manuel
    Wiley, Kathleen E.
    Suarez, Brian K.
    Witjes, J. Alfred
    Frigge, Mike
    Ober, Carole
    Jonsson, Eirikur
    Einarsson, Gudmundur V.
    Mayordomo, Jose I.
    Kiemeney, Lambertus A.
    Isaacs, William B.
    Catalona, William J.
    Barkardottir, Rosa B.
    Gulcher, Jeffrey R.
    Thorsteinsdottir, Unnur
    Kong, Augustine
    [J]. NATURE GENETICS, 2007, 39 (05) : 631 - 637
  • [17] Signaling cross-talk between TGF-β/BMP and other pathways
    Guo, Xing
    Wang, Xiao-Fan
    [J]. CELL RESEARCH, 2009, 19 (01) : 71 - 88
  • [18] Smad7-induced β-catenin degradation alters epidermal appendage development
    Han, Gangwen
    Li, Allen G.
    Liang, Yao-Yun
    Owens, Philip
    He, Wei
    Lu, Shilong
    Yoshimatsu, Yasuhiro
    Wang, Donna
    ten Dijke, Peter
    Lin, Xia
    Wang, Xiao-Jing
    [J]. DEVELOPMENTAL CELL, 2006, 11 (03) : 301 - 312
  • [19] Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33
    Houlston, Richard S.
    Cheadle, Jeremy
    Dobbins, Sara E.
    Tenesa, Albert
    Jones, Angela M.
    Howarth, Kimberley
    Spain, Sarah L.
    Broderick, Peter
    Domingo, Enric
    Farrington, Susan
    Prendergast, James G. D.
    Pittman, Alan M.
    Theodoratou, Evi
    Smith, Christopher G.
    Olver, Bianca
    Walther, Axel
    Barnetson, Rebecca A.
    Churchman, Michael
    Jaeger, Emma E. M.
    Penegar, Steven
    Barclay, Ella
    Martin, Lynn
    Gorman, Maggie
    Mager, Rachel
    Johnstone, Elaine
    Midgley, Rachel
    Niittymaki, Iina
    Tuupanen, Sari
    Colley, James
    Idziaszczyk, Shelley
    Thomas, Huw J. W.
    Lucassen, Anneke M.
    Evans, D. Gareth R.
    Maher, Eamonn R.
    Maughan, Timothy
    Dimas, Antigone
    Dermitzakis, Emmanouil
    Cazier, Jean-Baptiste
    Aaltonen, Lauri A.
    Pharoah, Paul
    Kerr, David J.
    Carvajal-Carmona, Luis G.
    Campbell, Harry
    Dunlop, Malcolm G.
    Tomlinson, Ian P. M.
    [J]. NATURE GENETICS, 2010, 42 (11) : 973 - U89
  • [20] Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer
    Houlston, Richard S.
    Webb, Emily
    Broderick, Peter
    Pittman, Alan M.
    Di Bernardo, Maria Chiara
    Lubbe, Steven
    Chandler, Ian
    Vijayakrishnan, Jayaram
    Sullivan, Kate
    Penegar, Steven
    Carvajal-Carmona, Luis
    Howarth, Kimberley
    Jaeger, Emma
    Spain, Sarah L.
    Walther, Axel
    Barclay, Ella
    Martin, Lynn
    Gorman, Maggie
    Domingo, Enric
    Teixeira, Ana S.
    Kerr, David
    Cazier, Jean-Baptiste
    Niittymaki, Iina
    Tuupanen, Sari
    Karhu, Auli
    Aaltonen, Lauri A.
    Tomlinson, Ian P. M.
    Farrington, Susan M.
    Tenesa, Albert
    Prendergast, James G. D.
    Barnetson, Rebecca A.
    Cetnarskyj, Roseanne
    Porteous, Mary E.
    Pharoah, Paul D. P.
    Koessler, Thibaud
    Hampe, Jochen
    Buch, Stephan
    Schafmayer, Clemens
    Tepel, Jurgen
    Schreiber, Stefan
    Voelzke, Henry
    Chang-Claude, Jenny
    Hoffmeister, Michael
    Brenner, Hermann
    Zanke, Brent W.
    Montpetit, Alexandre
    Hudson, Thomas J.
    Gallinger, Steven
    Campbell, Harry
    Dunlop, Malcolm G.
    [J]. NATURE GENETICS, 2008, 40 (12) : 1426 - 1435