Filimonas endophytica sp nov., isolated from surface-sterilized root of Cosmos bipinnatus

被引:7
作者
Han, Ji-Hye [1 ,2 ]
Kim, Tae-Su [1 ]
Joung, Yochan [1 ,3 ]
Kim, Seung Bum [1 ]
机构
[1] Chungnam Natl Univ, Sch Biosci & Biotechnol, Dept Microbiol & Mol Biol, 220 Gung Dong, Taejon 305764, South Korea
[2] Nakdonggang Natl Inst Biol Resources, Freshwater Bioresources Res Div, Bacterial Resources Res Team, Sangju 37242, Gyeongsangbuk D, South Korea
[3] Inha Univ, Dept Biol, Inchon 402751, South Korea
关键词
GEN; NOV; EMENDED DESCRIPTION; MEMBER;
D O I
10.1099/ijsem.0.000661
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-stain-negative, yellow, motile by gliding, filamentous bacterium, designated SR 2-06(T), was isolated from surface-sterilized root of garden cosmos. 16S rRNA gene sequence analysis indicated that SR 2-06(T) was related most closely to Filimonas lacunae YT21(T) of the family Chitinophagaceae at a sequence similarity of 96.90 %, while levels of similarity to other related taxa were less than 93.08 %. Strain SR 2-06(T) exhibited similar features to F. lacunae in that it contained MK-7 as the major respiratory quinone, and iso-C-15 (:) (1) G, iso-C-15 (:) (0) and a summed feature consisting of C-16 (:) (1)omega 6c and/or C-16 (:) (1)omega 7c as the major fatty acids. However, strain SR 2-06(T) was distinguished from F. lacunae using a combination of physiological and biochemical properties. The cellular polar lipids were phosphatidylethanolamine, unknown aminophos-pholipids, unknown aminolipids, an unknown phospholipid and unidentified polar lipids. The DNA G+C content was 46.0 mol%. The phenotypic and phylogenetic evidence clearly indicates that strain SR 2-06(T) represents a novel species of the genus Filimonas, for which the name Filimonas endophytica sp. nov. is proposed. The type strain is SR 2-06(T) (=KCTC 42060(T)=JCM 19844(T)).
引用
收藏
页码:4863 / 4867
页数:5
相关论文
共 16 条
[1]   A NOTE ON THE SEPARATION OF NATURAL MIXTURES OF BACTERIAL MENAQUINONES USING REVERSE PHASE THIN-LAYER CHROMATOGRAPHY [J].
COLLINS, MD ;
SHAH, HN ;
MINNIKIN, DE .
JOURNAL OF APPLIED BACTERIOLOGY, 1980, 48 (02) :277-282
[2]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[3]   TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY [J].
FITCH, WM .
SYSTEMATIC ZOOLOGY, 1971, 20 (04) :406-&
[4]   A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature [J].
Gonzalez, JM ;
Saiz-Jimenez, C .
ENVIRONMENTAL MICROBIOLOGY, 2002, 4 (11) :770-773
[5]   EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes [J].
Jeon, Yoon-Seong ;
Lee, Kihyun ;
Park, Sang-Cheol ;
Kim, Bong-Soo ;
Cho, Yong-Joon ;
Ha, Sung-Min ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :689-691
[6]  
Jukes TH., 1969, MAMM PROT METAB, V3, P21, DOI [10.1016/B978-1-4832-3211-9.50009-7, DOI 10.1016/B978-1-4832-3211-9.50009-7]
[7]   Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species [J].
Kim, Ok-Sun ;
Cho, Yong-Joon ;
Lee, Kihyun ;
Yoon, Seok-Hwan ;
Kim, Mincheol ;
Na, Hyunsoo ;
Park, Sang-Cheol ;
Jeon, Yoon Seong ;
Lee, Jae-Hak ;
Yi, Hana ;
Won, Sungho ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 :716-721
[8]   Conyzicola lurida gen. nov., sp nov., isolated from the root of Conyza canadensis [J].
Kim, Tae-Su ;
Han, Ji-Hye ;
Joung, Yochan ;
Kim, Seung Bum .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :2753-2757
[9]   Chitinophaga cymbidii sp nov., isolated from Cymbidium goeringii roots [J].
Li, Lubin ;
Sun, Lei ;
Shi, Nan ;
Liu, Lin ;
Guo, Huijuan ;
Xu, Aifang ;
Zhang, Xiaoxia ;
Yao, Na .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :1800-1804
[10]   Chitinophaga costaii sp nov., an endophyte of Pinus pinaster, and emended description of Chitinophaga niabensis [J].
Proenca, Diogo Neves ;
Nobre, Maria Fernanda ;
Morais, Paula V. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :1237-1243