Free-energy analysis of physisorption on solid-liquid interface with the solution theory in the energy representation

被引:5
作者
Yamamoto, Naoki [1 ]
Nakakuki, Ippei [1 ]
Matubayasi, Nobuyuki [1 ,2 ]
机构
[1] Osaka Univ, Grad Sch Engn Sci, Div Chem Engn, Toyonaka, Osaka 5608531, Japan
[2] Kyoto Univ, Elements Strategy Initiat Catalysts & Batteries, Kyoto 6158520, Japan
基金
日本学术振兴会;
关键词
MOLECULAR-DYNAMICS SIMULATION; SOLVATION FREE-ENERGIES; ACTIVE PHARMACEUTICAL INGREDIENTS; INTERACTION SITE MODEL; AMINO-ACID-ANALOGS; AMBER FORCE-FIELD; CRYSTAL-GROWTH; UREA CRYSTAL; AQUEOUS-SOLUTION; WATER MODELS;
D O I
10.1063/1.5027861
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Physisorption of urea on its crystal in contact with water was subject to energetics analysis with all-atom molecular dynamics simulation. The transfer free energy of urea to an adsorption site was treated in the framework of the energy-representation theory of solutions, which allows a fast computation of the free energy in an inhomogeneous environment with solid-liquid interface. The preference of adsorption was then compared between the (001) and (110) faces, and it was found that the physisorption is more favorable on (001) than on (110) in correspondence to the hydrogen bonding between the adsorbed urea and the crystal urea. Among the terrace configurations of adsorption, the attractive interaction governs the preferable site with a minor role of the repulsive interaction. The effect of an edge was also treated by examining the terrace and step and was shown to be strongly operative on the (110) face when the CO group of the adsorbed urea points toward the edge. The present work demonstrates that the solution theory can be a framework for analyzing the energetics of physisorption and addressing the roles of the crystal and liquid at the interface through the systematic decomposition of free energy. Published by AIP Publishing.
引用
收藏
页数:10
相关论文
共 67 条
  • [1] Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
    Abraham, Mark James
    Murtola, Teemu
    Schulz, Roland
    Páll, Szilárd
    Smith, Jeremy C.
    Hess, Berk
    Lindah, Erik
    [J]. SoftwareX, 2015, 1-2 : 19 - 25
  • [2] Alberto Pimpinelli, 1998, PHYS CRYSTAL GROWTH
  • [3] Mechanism of Urea Crystal Dissolution in Water from Molecular Dynamics Simulation
    Anand, Abhinav
    Patey, G. N.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2018, 122 (03) : 1213 - 1222
  • [4] [Anonymous], 2013, PHYS CHEM INTERFACES
  • [5] NEW METHOD FOR PREDICTING BINDING-AFFINITY IN COMPUTER-AIDED DRUG DESIGN
    AQVIST, J
    MEDINA, C
    SAMUELSSON, JE
    [J]. PROTEIN ENGINEERING, 1994, 7 (03): : 385 - 391
  • [6] EFFICIENT ESTIMATION OF FREE-ENERGY DIFFERENCES FROM MONTE-CARLO DATA
    BENNETT, CH
    [J]. JOURNAL OF COMPUTATIONAL PHYSICS, 1976, 22 (02) : 245 - 268
  • [7] MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH
    BERENDSEN, HJC
    POSTMA, JPM
    VANGUNSTEREN, WF
    DINOLA, A
    HAAK, JR
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) : 3684 - 3690
  • [8] AVOIDING SINGULARITIES AND NUMERICAL INSTABILITIES IN FREE-ENERGY CALCULATIONS BASED ON MOLECULAR SIMULATIONS
    BEUTLER, TC
    MARK, AE
    VANSCHAIK, RC
    GERBER, PR
    VANGUNSTEREN, WF
    [J]. CHEMICAL PHYSICS LETTERS, 1994, 222 (06) : 529 - 539
  • [9] AN EXTENDED LINEAR-RESPONSE METHOD FOR DETERMINING FREE-ENERGIES OF HYDRATION
    CARLSON, HA
    JORGENSEN, WL
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1995, 99 (26) : 10667 - 10673
  • [10] Improved estimates for hydration free energy obtained by the reference interaction site model
    Chuev, Gennady N.
    Fedorov, Maxim V.
    Crain, Jason
    [J]. CHEMICAL PHYSICS LETTERS, 2007, 448 (4-6) : 198 - 202