Harmonization strategies for multicenter radiomics investigations

被引:114
作者
Da-Ano, R. [1 ]
Visvikis, D. [1 ]
Hatt, M. [1 ]
机构
[1] Univ Brest, LaTiM, INSERM, UMR 1101, Brest, France
基金
欧盟地平线“2020”;
关键词
radiomics; batch effect removal; deep learning; data integration; CELL LUNG-CANCER; TEXTURAL FEATURES; PROSTATE-CANCER; HETEROGENEITY QUANTIFICATION; GENE-EXPRESSION; PET IMAGES; F-18-FDG; REPRODUCIBILITY; IMPACT; RECONSTRUCTION;
D O I
10.1088/1361-6560/aba798
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
Carrying out large multicenter studies is one of the key goals to be achieved towards a faster transfer of the radiomics approach in the clinical setting. This requires large-scale radiomics data analysis, hence the need for integrating radiomic features extracted from images acquired in different centers. This is challenging as radiomic features exhibit variable sensitivity to differences in scanner model, acquisition protocols and reconstruction settings, which is similar to the so-called 'batch-effects' in genomics studies. In this review we discuss existing methods to perform data integration with the aid of reducing the unwanted variation associated with batch effects. We also discuss the future potential role of deep learning methods in providing solutions for addressing radiomic multicentre studies.
引用
收藏
页数:15
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共 91 条
  • [81] Stability of radiomic features of apparent diffusion coefficient (ADC) maps for locally advanced rectal cancer in response to image pre-processing
    Traverso, Alberto
    Kazmierski, Michal
    Shi, Zhenwei
    Kalendralis, Petros
    Welch, Mattea
    Nissen, Henrik Dahl
    Jaffray, David
    Dekker, Andre
    Wee, Leonard
    [J]. PHYSICA MEDICA-EUROPEAN JOURNAL OF MEDICAL PHYSICS, 2019, 61 : 44 - 51
  • [82] Repeatability of Radiomic Features in Non-Small-Cell Lung Cancer [18F]FDG-PET/CT Studies: Impact of Reconstruction and Delineation
    van Velden, Floris H. P.
    Kramer, Gerbrand M.
    Frings, Virginie
    Nissen, Ida A.
    Mulder, Emma R.
    de Langen, Adrianus J.
    Hoekstra, Otto S.
    Smit, Egbert F.
    Boellaard, Ronald
    [J]. MOLECULAR IMAGING AND BIOLOGY, 2016, 18 (05) : 788 - 795
  • [83] Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes
    Warnat, P
    Eils, R
    Brors, B
    [J]. BMC BIOINFORMATICS, 2005, 6 (1)
  • [84] Haralick texture analysis of prostate MRI: utility for differentiating non-cancerous prostate from prostate cancer and differentiating prostate cancers with different Gleason scores
    Wibmer, Andreas
    Hricak, Hedvig
    Gondo, Tatsuo
    Matsumoto, Kazuhiro
    Veeraraghavan, Harini
    Fehr, Duc
    Zheng, Junting
    Goldman, Debra
    Moskowitz, Chaya
    Fine, Samson W.
    Reuter, Victor E.
    Eastham, James
    Sala, Evis
    Vargas, Hebert Alberto
    [J]. EUROPEAN RADIOLOGY, 2015, 25 (10) : 2840 - 2850
  • [85] Impact of Image Reconstruction Settings on Texture Features in 18F-FDG PET
    Yan, Jianhua
    Chu-Shern, Jason Lim
    Loi, Hoi Yin
    Khor, Lih Kin
    Sinha, Arvind K.
    Quek, Swee Tian
    Tham, Ivan W. K.
    Townsend, David
    [J]. JOURNAL OF NUCLEAR MEDICINE, 2015, 56 (11) : 1667 - 1673
  • [86] Applications and limitations of radiomics
    Yip, Stephen S. F.
    Aerts, Hugo J. W. L.
    [J]. PHYSICS IN MEDICINE AND BIOLOGY, 2016, 61 (13) : R150 - R166
  • [87] Class dependent feature scaling method using naive Bayes classifier for text datamining
    Youn, Eunseog
    Jeong, Myong K.
    [J]. PATTERN RECOGNITION LETTERS, 2009, 30 (05) : 477 - 485
  • [88] Coregistered FDG PET/CT-Based Textural Characterization of Head and Neck Cancer for Radiation Treatment Planning
    Yu, Huan
    Caldwell, Curtis
    Mah, Katherine
    Mozeg, Daniel
    [J]. IEEE TRANSACTIONS ON MEDICAL IMAGING, 2009, 28 (03) : 374 - 383
  • [89] Learning from scanners: Bias reduction and feature correction in radiomics
    Zhovannik, Ivan
    Bussink, Johan
    Traverso, Alberto
    Shi, Zhenwei
    Kalendralis, Petros
    Wee, Leonard
    Dekker, Andre
    Fijten, Rianne
    Monshouwer, Rene
    [J]. CLINICAL AND TRANSLATIONAL RADIATION ONCOLOGY, 2019, 19 : 33 - 38
  • [90] Radiomics in nuclear medicine: robustness, reproducibility, standardization, and how to avoid data analysis traps and replication crisis
    Zwanenburg, Alex
    [J]. EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING, 2019, 46 (13) : 2638 - 2655