Harmonization strategies for multicenter radiomics investigations

被引:117
作者
Da-Ano, R. [1 ]
Visvikis, D. [1 ]
Hatt, M. [1 ]
机构
[1] Univ Brest, LaTiM, INSERM, UMR 1101, Brest, France
基金
欧盟地平线“2020”;
关键词
radiomics; batch effect removal; deep learning; data integration; CELL LUNG-CANCER; TEXTURAL FEATURES; PROSTATE-CANCER; HETEROGENEITY QUANTIFICATION; GENE-EXPRESSION; PET IMAGES; F-18-FDG; REPRODUCIBILITY; IMPACT; RECONSTRUCTION;
D O I
10.1088/1361-6560/aba798
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
Carrying out large multicenter studies is one of the key goals to be achieved towards a faster transfer of the radiomics approach in the clinical setting. This requires large-scale radiomics data analysis, hence the need for integrating radiomic features extracted from images acquired in different centers. This is challenging as radiomic features exhibit variable sensitivity to differences in scanner model, acquisition protocols and reconstruction settings, which is similar to the so-called 'batch-effects' in genomics studies. In this review we discuss existing methods to perform data integration with the aid of reducing the unwanted variation associated with batch effects. We also discuss the future potential role of deep learning methods in providing solutions for addressing radiomic multicentre studies.
引用
收藏
页数:15
相关论文
共 91 条
[81]   Stability of radiomic features of apparent diffusion coefficient (ADC) maps for locally advanced rectal cancer in response to image pre-processing [J].
Traverso, Alberto ;
Kazmierski, Michal ;
Shi, Zhenwei ;
Kalendralis, Petros ;
Welch, Mattea ;
Nissen, Henrik Dahl ;
Jaffray, David ;
Dekker, Andre ;
Wee, Leonard .
PHYSICA MEDICA-EUROPEAN JOURNAL OF MEDICAL PHYSICS, 2019, 61 :44-51
[82]   Repeatability of Radiomic Features in Non-Small-Cell Lung Cancer [18F]FDG-PET/CT Studies: Impact of Reconstruction and Delineation [J].
van Velden, Floris H. P. ;
Kramer, Gerbrand M. ;
Frings, Virginie ;
Nissen, Ida A. ;
Mulder, Emma R. ;
de Langen, Adrianus J. ;
Hoekstra, Otto S. ;
Smit, Egbert F. ;
Boellaard, Ronald .
MOLECULAR IMAGING AND BIOLOGY, 2016, 18 (05) :788-795
[83]   Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes [J].
Warnat, P ;
Eils, R ;
Brors, B .
BMC BIOINFORMATICS, 2005, 6 (1)
[84]   Haralick texture analysis of prostate MRI: utility for differentiating non-cancerous prostate from prostate cancer and differentiating prostate cancers with different Gleason scores [J].
Wibmer, Andreas ;
Hricak, Hedvig ;
Gondo, Tatsuo ;
Matsumoto, Kazuhiro ;
Veeraraghavan, Harini ;
Fehr, Duc ;
Zheng, Junting ;
Goldman, Debra ;
Moskowitz, Chaya ;
Fine, Samson W. ;
Reuter, Victor E. ;
Eastham, James ;
Sala, Evis ;
Vargas, Hebert Alberto .
EUROPEAN RADIOLOGY, 2015, 25 (10) :2840-2850
[85]   Impact of Image Reconstruction Settings on Texture Features in 18F-FDG PET [J].
Yan, Jianhua ;
Chu-Shern, Jason Lim ;
Loi, Hoi Yin ;
Khor, Lih Kin ;
Sinha, Arvind K. ;
Quek, Swee Tian ;
Tham, Ivan W. K. ;
Townsend, David .
JOURNAL OF NUCLEAR MEDICINE, 2015, 56 (11) :1667-1673
[86]   Applications and limitations of radiomics [J].
Yip, Stephen S. F. ;
Aerts, Hugo J. W. L. .
PHYSICS IN MEDICINE AND BIOLOGY, 2016, 61 (13) :R150-R166
[87]   Class dependent feature scaling method using naive Bayes classifier for text datamining [J].
Youn, Eunseog ;
Jeong, Myong K. .
PATTERN RECOGNITION LETTERS, 2009, 30 (05) :477-485
[88]   Coregistered FDG PET/CT-Based Textural Characterization of Head and Neck Cancer for Radiation Treatment Planning [J].
Yu, Huan ;
Caldwell, Curtis ;
Mah, Katherine ;
Mozeg, Daniel .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2009, 28 (03) :374-383
[89]   Learning from scanners: Bias reduction and feature correction in radiomics [J].
Zhovannik, Ivan ;
Bussink, Johan ;
Traverso, Alberto ;
Shi, Zhenwei ;
Kalendralis, Petros ;
Wee, Leonard ;
Dekker, Andre ;
Fijten, Rianne ;
Monshouwer, Rene .
CLINICAL AND TRANSLATIONAL RADIATION ONCOLOGY, 2019, 19 :33-38
[90]   Radiomics in nuclear medicine: robustness, reproducibility, standardization, and how to avoid data analysis traps and replication crisis [J].
Zwanenburg, Alex .
EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING, 2019, 46 (13) :2638-2655