Harmonization strategies for multicenter radiomics investigations

被引:114
作者
Da-Ano, R. [1 ]
Visvikis, D. [1 ]
Hatt, M. [1 ]
机构
[1] Univ Brest, LaTiM, INSERM, UMR 1101, Brest, France
基金
欧盟地平线“2020”;
关键词
radiomics; batch effect removal; deep learning; data integration; CELL LUNG-CANCER; TEXTURAL FEATURES; PROSTATE-CANCER; HETEROGENEITY QUANTIFICATION; GENE-EXPRESSION; PET IMAGES; F-18-FDG; REPRODUCIBILITY; IMPACT; RECONSTRUCTION;
D O I
10.1088/1361-6560/aba798
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
Carrying out large multicenter studies is one of the key goals to be achieved towards a faster transfer of the radiomics approach in the clinical setting. This requires large-scale radiomics data analysis, hence the need for integrating radiomic features extracted from images acquired in different centers. This is challenging as radiomic features exhibit variable sensitivity to differences in scanner model, acquisition protocols and reconstruction settings, which is similar to the so-called 'batch-effects' in genomics studies. In this review we discuss existing methods to perform data integration with the aid of reducing the unwanted variation associated with batch effects. We also discuss the future potential role of deep learning methods in providing solutions for addressing radiomic multicentre studies.
引用
收藏
页数:15
相关论文
共 91 条
  • [11] Influence of MRI acquisition protocols and image intensity normalization methods on texture classification
    Collewet, G
    Strzelecki, M
    Mariette, F
    [J]. MAGNETIC RESONANCE IMAGING, 2004, 22 (01) : 81 - 91
  • [12] Are Pretreatment 18F-FDG PET Tumor Textural Features in Non-Small Cell Lung Cancer Associated with Response and Survival After Chemoradiotherapy?
    Cook, Gary J. R.
    Yip, Connie
    Siddique, Muhammad
    Goh, Vicky
    Chicklore, Sugama
    Roy, Arunabha
    Marsden, Paul
    Ahmad, Shahreen
    Landau, David
    [J]. JOURNAL OF NUCLEAR MEDICINE, 2013, 54 (01) : 19 - 26
  • [13] Computational resources for radiomics
    Court, Laurence E.
    Fave, Xenia
    Mackin, Dennis
    Lee, Joonsang
    Yang, Jinzhong
    Zhang, Lifei
    [J]. TRANSLATIONAL CANCER RESEARCH, 2016, 5 (04) : 340 - 348
  • [14] Cristianini N, 2000, INTRO SUPPORT VECTOR
  • [15] Performance comparison of modified ComBat for harmonization of radiomic features for multicenter studies
    Da-ano, R.
    Masson, I
    Lucia, F.
    Dore, M.
    Robin, P.
    Alfieri, J.
    Rousseau, C.
    Mervoyer, A.
    Reinhold, C.
    Castelli, J.
    De Crevoisier, R.
    Ramee, J. F.
    Pradier, O.
    Schick, U.
    Visvikis, D.
    Hatt, M.
    [J]. SCIENTIFIC REPORTS, 2020, 10 (01)
  • [16] Pretreatment 18F-FDG PET/CT Radiomics Predict Local Recurrence in Patients Treated with Stereotactic Body Radiotherapy for Early-Stage Non-Small Cell Lung Cancer: A Multicentric Study
    Dissaux, Gurvan
    Visvikis, Dimitris
    Da-ano, Ronrick
    Pradier, Olivier
    Chajon, Enrique
    Barillot, Isabelle
    Duverge, Loig
    Masson, Ingrid
    Abgral, Ronan
    Ribeiro, Maria-Joao Santiago
    Devillers, Anne
    Pallardy, Amandine
    Fleury, Vincent
    Mahe, Marc-Andre
    De Crevoisier, Renaud
    Hatt, Mathieu
    Schick, Ulrike
    [J]. JOURNAL OF NUCLEAR MEDICINE, 2020, 61 (06) : 814 - 820
  • [17] Gray-level discretization impacts reproducible MRI radiomics texture features
    Duron, Loic
    Balvay, Daniel
    Perre, Saskia Vande
    Bouchouicha, Afef
    Savatovsky, Julien
    Sadik, Jean-Claude
    Thomassin-Naggara, Isabelle
    Fournier, Laure
    Lecler, Augustin
    [J]. PLOS ONE, 2019, 14 (03):
  • [18] Impact of image preprocessing on the volume dependence and prognostic potential of radiomics features in non-small cell lung cancer
    Fave, Xenia
    Zhang, Lifei
    Yang, Jinzhong
    Mackin, Dennis
    Balter, Peter
    Gomez, Daniel
    Followill, David
    Jones, A. Kyle
    Stingo, Francesco
    Court, Laurence E.
    [J]. TRANSLATIONAL CANCER RESEARCH, 2016, 5 (04) : 349 - 363
  • [19] Automatic classification of prostate cancer Gleason scores from multiparametric magnetic resonance images
    Fehr, Duc
    Veeraraghavan, Harini
    Wibmer, Andreas
    Gondo, Tatsuo
    Matsumoto, Kazuhiro
    Vargas, Herbert Alberto
    Sala, Evis
    Hricak, Hedvig
    Deasy, Joseph O.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (46) : E6265 - E6273
  • [20] Repeatability and reproducibility of MRI-based radiomic features in cervical cancer
    Fiset, Sandra
    Welch, Mattea L.
    Weiss, Jessica
    Pintilie, Melania
    Conway, Jessica L.
    Milosevic, Michael
    Fyles, Anthony
    Traverso, Alberto
    Jaffra, David
    Metser, Ur
    Xie, Jason
    Han, Kathy
    [J]. RADIOTHERAPY AND ONCOLOGY, 2019, 135 : 107 - 114