Method for Classifying a Noisy Raman Spectrum Based on a Wavelet Transform and a Deep Neural Network

被引:17
作者
Pan, Liangrui [1 ]
Pipitsunthonsan, Pronthep [1 ]
Daengngam, Chalongrat [2 ]
Channumsin, Sittiporn [3 ]
Sreesawet, Suwat [3 ]
Chongcheawchamnan, Mitchai [1 ]
机构
[1] Prince Songkla Univ, Fac Engn, Hat Yai 90110, Thailand
[2] Prince Songkla Univ, Fac Sci, Hat Yai 90110, Thailand
[3] Geoinformat & Space Technol Dev Agcy GISTDA, Chon Buri 20230, Thailand
关键词
Raman spectrum; baseline noise; wavelet transform; deep convolution neural network; accuracy; robustness; DECISION TREE; CLASSIFICATION; SPECTROSCOPY; RECOGNITION; DATABASE;
D O I
10.1109/ACCESS.2020.3035884
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Because it is relatively difficult in practice to classify the Raman spectrum under baseline noise and additive white Gaussian noise environments, this paper proposes a new framework based on a wavelet transform and deep neural network for identification of noisy Raman spectra. The framework consists of two main engines. Wavelet transform is proposed as the framework front end for transforming the 1-D noise Raman spectrum to two-dimensional data. The two-dimensional data are fed to the framework back end, which is a classifier. The optimum classifier is chosen by implementing several traditional machine learning (ML) and deep learning (DL) algorithms, and we investigate their classification accuracy and robustness performances. The four chosen MLs are naive Bayes (NB), a support vector machine (SVM), a random forest (RF) and a k-nearest neighbor (KNN), and a deep convolution neural network (DCNN) was chosen as a DL classifier. Noise-free, Gaussian noise, baseline noise, and mixed-noise Raman spectra were applied to train and validate the ML and DCNN models. The optimum back-end classifier was obtained by testing the ML and DCNN models with several noisy Raman spectra (10-30 dB noise power). Based on the simulation, the accuracy of the DCNN classifier is 9% higher than that of the NB classifier, 3.5% higher than the RF classifier, 1% higher than the KNN classifier, and 0.5% higher than the SVM classifier. In terms of robustness to mixed noise scenarios, the framework with the DCNN back end showed superior performance compared with the other ML back ends. The DCNN back end achieved 90% accuracy at 3 dB SNR, while the NB, SVM, RF, and K-NN back ends required 27 dB, 22 dB, 27 dB, and 23 dB SNR, respectively. In addition, in the low-noise test dataset, the F-measure score of the DCNN back end exceeded 99.1%, and the F-measure scores of the other ML engines were below 98.7%.
引用
收藏
页码:202716 / 202727
页数:12
相关论文
共 43 条
[1]   A real-time crash prediction fusion framework: An imbalance- aware strategy for collision avoidance systems [J].
Abou Elassad, Zouhair Elamrani ;
Mousannif, Hajar ;
Al Moatassime, Hassan .
TRANSPORTATION RESEARCH PART C-EMERGING TECHNOLOGIES, 2020, 118
[2]  
Agarap Abien Fred, 2018, ARXIV180308375
[3]   Fourier-transform Raman analysis of milk powder: a potential method for rapid quality screening [J].
Almeida, Mariana R. ;
Oliveira, Kamila de S. ;
Stephani, Rodrigo ;
de Oliveira, Luiz Fernando C. .
JOURNAL OF RAMAN SPECTROSCOPY, 2011, 42 (07) :1548-1552
[4]   Deep Learning for EEG motor imagery classification based on multi-layer CNNs feature fusion [J].
Amin, Syed Umar ;
Alsulaiman, Mansour ;
Muhammad, Ghulam ;
Mekhtiche, Mohamed Amine ;
Hossain, M. Shamim .
FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, 2019, 101 :542-554
[5]  
[Anonymous], 2013, P C COMP SCI INF TEC, DOI DOI 10.5121/CSIT.2013
[6]   Baseline correction using asymmetrically reweighted penalized least squares smoothing [J].
Baek, Sung-June ;
Park, Aaron ;
Ahn, Young-Jin ;
Choo, Jaebum .
ANALYST, 2015, 140 (01) :250-257
[7]   Application of wavelet transforms to experimental spectra: Smoothing, denoising, and data set compression [J].
Barclay, VJ ;
Bonner, RF ;
Hamilton, IP .
ANALYTICAL CHEMISTRY, 1997, 69 (01) :78-90
[8]   Near-infrared Fourier transform Raman, surface-enhanced Raman scattering and Fourier transform infrared spectra and ab initio calculations of the natural product nodakenetin angelate [J].
Binoy, J ;
Abraham, JP ;
Joe, IH ;
George, V ;
Jayakumar, VS ;
Aubard, J ;
Nielsen, OF .
JOURNAL OF RAMAN SPECTROSCOPY, 2005, 36 (01) :63-72
[9]   On-line FT-Raman and dispersive Raman spectra database of artists' materials (e-VISART database) [J].
Castro, K ;
Pérez-Alonso, M ;
Rodríguez-Laso, MD ;
Fernández, LA ;
Madariaga, JM .
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2005, 382 (02) :248-258
[10]   Reference database of Raman spectra of biological molecules [J].
De Gelder, Joke ;
De Gussem, Kris ;
Vandenabeele, Peter ;
Moens, Luc .
JOURNAL OF RAMAN SPECTROSCOPY, 2007, 38 (09) :1133-1147