The role of mobile genetic elements in organic micropollutant degradation during biological wastewater treatment

被引:35
作者
Miguel, Ana B. Rios [1 ]
Jetten, Mike S. M. [1 ,2 ]
Welte, Cornelia U. [1 ,2 ]
机构
[1] Radboud Univ Nijmegen, Inst Water & Wetland Res, Dept Microbiol, Heyendaalseweg 135, NL-6525 AJ Nijmegen, Netherlands
[2] Radboud Univ Nijmegen, Soehngen Inst Anaerob Microbiol, Heyendaalseweg 135, NL-6525 AJ Nijmegen, Netherlands
来源
WATER RESEARCH X | 2020年 / 9卷 / 09期
关键词
Mobile genetic elements; Plasmids; Organic micropollutants; Wastewater treatment plants; Biodegradation; Bioaugmentation; ANTIBIOTIC-RESISTANCE GENES; ACTIVATED-SLUDGE BACTERIA; METAGENOMIC ANALYSIS REVEALS; FARM BIOPURIFICATION SYSTEM; COMAMONAS STRAIN CNB-1; 16S RIBOSOMAL-RNA; PSEUDOMONAS-PUTIDA; HORIZONTAL TRANSFER; NUCLEOTIDE-SEQUENCE; BIOFILM REACTOR;
D O I
10.1016/j.wroa.2020.100065
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Wastewater treatment plants (WWTPs) are crucial for producing clean effluents from polluting sources such as hospitals, industries, and municipalities. In recent decades, many new organic compounds have ended up in surface waters in concentrations that, while very low, cause (chronic) toxicity to countless organisms. These organic micropollutants (OMPs) are usually quite recalcitrant and not sufficiently removed during wastewater treatment. Microbial degradation plays a pivotal role in OMP conversion. Microorganisms can adapt their metabolism to the use of novel molecules via mutations and rear-rangements of existing genes in new clusters. Many catabolic genes have been found adjacent to mobile genetic elements (MGEs), which provide a stable scaffold to host new catabolic pathways and spread these genes in the microbial community. These mobile systems could be engineered to enhance OMP degradation in WWTPs, and this review aims to summarize and better understand the role that MGEs might play in the degradation and wastewater treatment process. Available data about the presence of catabolic MGEs in WWTPs are reviewed, and current methods used to identify and measure MGEs in environmental samples are critically evaluated. Finally, examples of how these MGEs could be used to improve micropollutant degradation in WWTPs are outlined. In the near future, advances in the use of MGEs will hopefully enable us to apply selective augmentation strategies to improve OMP conversion in WWTPs. (C) 2020 The Authors. Published by Elsevier Ltd.
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页数:17
相关论文
共 165 条
[1]   Opportunities and challenges in long-read sequencing data analysis [J].
Amarasinghe, Shanika L. ;
Su, Shian ;
Dong, Xueyi ;
Zappia, Luke ;
Ritchie, Matthew E. ;
Gouil, Quentin .
GENOME BIOLOGY, 2020, 21 (01)
[2]   METAVIRALSPADES: assembly of viruses from metagenomic data [J].
Antipov, Dmitry ;
Raiko, Mikhail ;
Lapidus, Alla ;
Pevzner, Pavel A. .
BIOINFORMATICS, 2020, 36 (14) :4126-4129
[3]   Plasmid detection and assembly in genomic and metagenomic data sets [J].
Antipov, Dmitry ;
Raiko, Mikhail ;
Lapidus, Alla ;
Pevzner, Pavel A. .
GENOME RESEARCH, 2019, 29 (06) :961-968
[4]   Molecular and cellular fundamentals of aerobic cometabolism of trichloroethylene [J].
Arp, DJ ;
Yeager, CM ;
Hyman, MR .
BIODEGRADATION, 2001, 12 (02) :81-103
[5]   gplas: a comprehensive tool for plasmid analysis using short-read graphs [J].
Arredondo-Alonso, Sergio ;
Bootsma, Martin ;
Hein, Yair ;
Rogers, Malbert R. C. ;
Corander, Jukka ;
Willems, Rob J. L. ;
Schurch, Anita C. .
BIOINFORMATICS, 2020, 36 (12) :3874-3876
[6]   mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species [J].
Arredondo-Alonso, Sergio ;
Rogers, Malbert R. C. ;
Braat, Johanna C. ;
Verschuuren, Tess D. ;
Top, Janetta ;
Corander, Jukka ;
Willems, Rob J. L. ;
Schurch, Anita C. .
MICROBIAL GENOMICS, 2018, 4 (11)
[7]   On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data [J].
Arredondo-Alonso, Sergio ;
Willems, Rob J. ;
van Schaik, Willem ;
Schurch, Anita C. .
MICROBIAL GENOMICS, 2017, 3 (10)
[8]  
Asin-Garcia E., 2020, TRENDS BIOTECHNOL, P30110
[9]   All IncP-1 plasmid subgroups, including the novel ε subgroup, are prevalent in the influent of a Danish wastewater treatment plant [J].
Bahl, Martin Iain ;
Burmolle, Mette ;
Meisner, Annelein ;
Hansen, Lars Hestbjerg ;
Sorensen, Soren J. .
PLASMID, 2009, 62 (02) :134-139
[10]   Plasmid-mediated bioaugmentation of activated sludge bacteria in a sequencing batch moving bed reactor using pNB2 [J].
Bathe, S ;
Schwarzenbeck, N ;
Hausner, M .
LETTERS IN APPLIED MICROBIOLOGY, 2005, 41 (03) :242-247