Wolbachia Acquisition by Drosophila yakuba-Clade Hosts and Transfer of Incompatibility Loci Between Distantly Related Wolbachia

被引:45
作者
Cooper, Brandon S. [1 ]
Vanderpool, Dan [2 ]
Conner, William R. [1 ]
Matute, Daniel R. [3 ]
Turelli, Michael [4 ]
机构
[1] Univ Montana, Div Biol Sci, Missoula, MT 59812 USA
[2] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA
[3] Univ North Carolina Chapel Hill, Biol Dept, Chapel Hill, NC 27510 USA
[4] Univ Calif Davis, Dept Evolut & Ecol, Davis, CA 95616 USA
基金
美国国家卫生研究院;
关键词
cytoplasmic incompatibility; horizontal gene transfer; introgression; transposable elements; WO phage; CYTOPLASMIC INCOMPATIBILITY; REPRODUCTIVE ISOLATION; HORIZONTAL TRANSFER; CULEX-PIPIENS; MITOCHONDRIAL-DNA; UNIDIRECTIONAL INCOMPATIBILITY; AUSTRALIAN POPULATIONS; PHYLOGENETIC ANALYSIS; SELECTIVE SWEEP; READ ALIGNMENT;
D O I
10.1534/genetics.119.302349
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Maternally transmitted Wolbachia infect about half of insect species, yet the predominant mode(s) of Wolbachia acquisition remains uncertain. Species-specific associations could be old, with Wolbachia and hosts codiversifying (i.e., cladogenic acquisition), or relatively young and acquired by horizontal transfer or introgression. The three Drosophila yakuba-clade hosts [(D. santomea, D. yakuba) D. teissieri] diverged similar to 3 MYA and currently hybridize on the West African islands Bioko and Sao Tome. Each species is polymorphic for nearly identical Wolbachia that cause weak cytoplasmic incompatibility (CI)-reduced egg hatch when uninfected females mate with infected males. D. yakuba-clade Wolbachia are closely related to wMel, globally polymorphic in D. melanogaster. We use draft Wolbachia and mitochondrial genomes to demonstrate that D. yakuba-clade phylogenies for Wolbachia and mitochondria tend to follow host nuclear phylogenies. However, roughly half of D. santomea individuals, sampled both inside and outside of the Sao Tome hybrid zone, have introgressed D. yakuba mitochondria. Both mitochondria and Wolbachia possess far more recent common ancestors than the bulk of the host nuclear genomes, precluding cladogenic Wolbachia acquisition. General concordance of Wolbachia and mitochondrial phylogenies suggests that horizontal transmission is rare, but varying relative rates of molecular divergence complicate chronogram-based statistical tests. Loci that cause CI in wMel are disrupted in D. yakuba-clade Wolbachia; but a second set of loci predicted to cause CI are located in the same WO prophage region. These alternative CI loci seem to have been acquired horizontally from distantly related Wolbachia, with transfer mediated by flanking Wolbachia-specific ISWpi1 transposons.
引用
收藏
页码:1399 / 1419
页数:21
相关论文
共 136 条
[1]   The Intracellular Bacterium Wolbachia Uses Parasitoid Wasps as Phoretic Vectors for Efficient Horizontal Transmission [J].
Ahmed, Muhammad Z. ;
Li, Shao-Jian ;
Xue, Xia ;
Yin, Xiang-Jie ;
Ren, Shun-Xiang ;
Jiggins, Francis M. ;
Greeff, Jaco M. ;
Qiu, Bao-Li .
PLOS PATHOGENS, 2015, 11 (02)
[2]  
[Anonymous], 2011, Sickle: a sliding-window, adaptive, quality-based trimming tool for FastQ files (version 1.33)
[3]  
[Anonymous], 1998, INFLUENTIAL PASSENGE
[4]  
Bachtrog D, 2006, EVOLUTION, V60, P292, DOI 10.1111/j.0014-3820.2006.tb01107.x
[5]   How Long Does Wolbachia Remain on Board? [J].
Bailly-Bechet, Marc ;
Martins-Simoes, Patricia ;
Szollosi, Gergely J. ;
Mialdea, Gladys ;
Sagot, Marie-France ;
Charlat, Sylvain .
MOLECULAR BIOLOGY AND EVOLUTION, 2017, 34 (05) :1183-1193
[6]   Spatial spread of Wolbachia in Rhagoletis cerasi populations [J].
Bakovic, Vid ;
Schebeck, Martin ;
Telschow, Arndt ;
Stauffer, Christian ;
Schuler, Hannes .
BIOLOGY LETTERS, 2018, 14 (05)
[7]   Insight into the routes of Wolbachia invasion:: high levels of horizontal transfer in the spider genus Agelenopsis revealed by Wolbachia strain and mitochondrial DNA diversity [J].
Baldo, Laura ;
Ayoub, Nadia A. ;
Hayashi, Cheryl Y. ;
Russell, Jacob A. ;
Stahlhut, Julie K. ;
Werren, John H. .
MOLECULAR ECOLOGY, 2008, 17 (02) :557-569
[8]   Multilocus sequence typing system for the endosymbiont Wolbachia pipientis [J].
Baldo, Laura ;
Hotopp, Julie C. Dunning ;
Jolley, Keith A. ;
Bordenstein, Seth R. ;
Biber, Sarah A. ;
Choudhury, Rhitoban Ray ;
Hayashi, Cheryl ;
Maiden, Martin C. J. ;
Tettelin, Herve ;
Werren, John H. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (11) :7098-7110
[9]   Phylogeny of Wolbachia in filarial nematodes [J].
Bandi, C ;
Anderson, TJC ;
Genchi, C ;
Blaxter, ML .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1998, 265 (1413) :2407-2413
[10]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477