Hydration Dynamics of Model Peptides with Different Hydrophobic Character

被引:1
作者
Lupi, Laura [1 ]
Bracco, Brenda [2 ]
Sassi, Paola [2 ]
Corezzi, Silvia [3 ]
Morresi, Assunta [2 ]
Fioretto, Daniele [3 ,4 ]
Comez, Lucia [4 ]
Paolantoni, Marco [2 ]
机构
[1] Univ Roma Tre, Dipartimento Matemat & Fis, I-00146 Rome, Italy
[2] Univ Perugia, Dipartimento Chim Biol & Biotecnol, I-06123 Perugia, Italy
[3] Univ Perugia, Dipartimento Fis & Geol, I-06123 Perugia, Italy
[4] Univ Perugia, IOM CNR, Dept Phys & Geol, I-060123 Perugia, Italy
来源
LIFE-BASEL | 2022年 / 12卷 / 04期
关键词
hydration shell; solvation dynamics; depolarized Rayleigh scattering; ATR-FTIR; protein hydration; DEPOLARIZED LIGHT-SCATTERING; AQUEOUS-SOLUTIONS; MOLECULAR-DYNAMICS; WATER; PROTEIN; SOLVATION; REORIENTATION; AGGREGATION; TEMPERATURE;
D O I
10.3390/life12040572
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The multi-scale dynamics of aqueous solutions of the hydrophilic peptide N-acetyl-glycine-methylamide (NAGMA) have been investigated through extended frequency-range depolarized light scattering (EDLS), which enables the broad-band detection of collective polarizability anisotropy fluctuations. The results have been compared to those obtained for N-acetyl-leucinemethylamide (NALMA), an amphiphilic peptide which shares with NAGMA the same polar backbone, but also contains an apolar group. Our study indicates that the two model peptides induce similar effects on the fast translational dynamics of surrounding water. Both systems slow down the mobility of solvating water molecules by a factor 6-8, with respect to the bulk. Moreover, the two peptides cause a comparable far-reaching spatial perturbation extending to more than two hydration layers in diluted conditions. The observed concentration dependence of the hydration number is explained considering the random superposition of different hydration shells, while no indication of solute aggregation phenomena has been found. The results indicate that the effect on the dynamics of water solvating the amphiphilic peptide is dominated by the hydrophilic backbone. The minor impact of the hydrophobic moiety on hydration features is consistent with structural findings derived by Fourier transform infrared (FTIR) measurements, performed in attenuated total reflectance (ATR) configuration. Additionally, we give evidence that, for both systems, the relaxation mode in the GHz frequency range probed by EDLS is related to solute rotational dynamics. The rotation of NALMA occurs at higher timescales, with respect to the rotation of NAGMA; both processes are significantly slower than the structural dynamics of hydration water, suggesting that solute and solvent motions are uncoupled. Finally, our results do not indicate the presence of super-slow water (relaxation times in the order of tens of picoseconds) around the peptides investigated.
引用
收藏
页数:15
相关论文
共 64 条
[1]   Water Determines the Structure and Dynamics of Proteins [J].
Bellissent-Funel, Marie-Claire ;
Hassanali, Ali ;
Havenith, Martina ;
Henchman, Richard ;
Pohl, Peter ;
Sterpone, Fabio ;
van der Spoel, David ;
Xu, Yao ;
Garcia, Angel E. .
CHEMICAL REVIEWS, 2016, 116 (13) :7673-7697
[2]   Molecular dynamics simulations and density functional theory studies of NALMA and NAGMA dipeptides [J].
Boopathi, Subramaniam ;
Kolandaivel, Ponmalai .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2013, 31 (02) :158-173
[3]   Solvation Dynamics of Model Peptides Probed by Terahertz Spectroscopy. Observation of the Onset of Collective Network Motions [J].
Born, Benjamin ;
Weingaertner, Hermann ;
Bruendermann, Erik ;
Havenith, Martina .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2009, 131 (10) :3752-3755
[4]   Molecular properties of aqueous solutions: a focus on the collective dynamics of hydration water [J].
Comez, L. ;
Paolantoni, M. ;
Sassi, P. ;
Corezzi, S. ;
Morresi, A. ;
Fioretto, D. .
SOFT MATTER, 2016, 12 (25) :5501-5514
[5]   Aqueous solvation of amphiphilic molecules by extended depolarized light scattering: the case of trimethylamine-N-oxide [J].
Comez, L. ;
Paolantoni, M. ;
Corezzi, S. ;
Lupi, L. ;
Sassi, P. ;
Morresi, A. ;
Fioretto, D. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (13) :8881-8889
[6]   Hydrophobic Hydration in Water-tert-Butyl Alcohol Solutions by Extended Depolarized Light Scattering [J].
Comez, L. ;
Paolantoni, M. ;
Lupi, L. ;
Sassi, P. ;
Corezzi, S. ;
Morres, A. ;
Fioretto, D. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2015, 119 (29) :9236-9243
[7]   Concentration dependence of hydration water in a model peptide [J].
Comez, Lucia ;
Perticaroli, Stefania ;
Paolantoni, Marco ;
Sassi, Paola ;
Corezzi, Silvia ;
Morresi, Assunta ;
Fioretto, Daniele .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2014, 16 (24) :12433-12440
[8]   More Is Different: Experimental Results on the Effect of Biomolecules on the Dynamics of Hydration Water [J].
Comez, Lucia ;
Lupi, Laura ;
Morresi, Assunta ;
Paolantoni, Marco ;
Sassi, Paola ;
Fioretto, Daniele .
JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2013, 4 (07) :1188-1192
[9]   Hydration and rotational diffusion of levoglucosan in aqueous solutions [J].
Corezzi, S. ;
Sassi, P. ;
Paolantoni, M. ;
Comez, L. ;
Morresi, A. ;
Fioretto, D. .
JOURNAL OF CHEMICAL PHYSICS, 2014, 140 (18)
[10]   Protein Hydration in a Bioprotecting Mixture [J].
Corezzi, Silvia ;
Bracco, Brenda ;
Sassi, Paola ;
Paolantoni, Marco ;
Comez, Lucia .
LIFE-BASEL, 2021, 11 (10)