Coherent network partitions

被引:6
作者
Angeleska, Angela [1 ]
Nikoloski, Zoran [2 ,3 ]
机构
[1] Univ Tampa, Dept Math, 401 W Kennedy Blvd, Tampa, FL 33606 USA
[2] Max Planck Inst Mol Plant Physiol, Syst Biol & Math Modeling Grp, Muhlenberg 1, D-14476 Potsdam, Germany
[3] Univ Potsdam, Inst Biochem & Biol, Bioinformat Grp, Karl Liebknecht Str 24-25, D-14476 Potsdam, Germany
关键词
Graph partitions; Network clustering; Coherence number; Coherent partition; MODULARITY; GRAPH; SET;
D O I
10.1016/j.dam.2019.02.048
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
Graph clustering is widely applied in the analysis of cellular networks reconstructed from large-scale data or obtained from experimental evidence. Here we introduce a new type of graph clustering based on the concept of coherent partition. A coherent partition of a graph G is a partition of the vertices of G that yields only disconnected subgraphs in the complement of G. The coherence number of G is then the size of the smallest edge cut inducing a coherent partition. A coherent partition of G is optimal if the size of the inducing edge cut is the coherence number of G. Given a graph G, we study coherent partitions and the coherence number in connection to (bi)clique partitions and the (bi)clique cover number. We show that the problem of finding the coherence number is NP-hard, but is of polynomial time complexity for trees. We also discuss the relation between coherent partitions and prominent graph clustering quality measures. (C) 2019 Elsevier B.V. All rights reserved.
引用
收藏
页码:283 / 290
页数:8
相关论文
共 33 条
[1]  
AKIYAMA J, 1979, INT J MATH MATH SCI, V2, P223
[2]  
[Anonymous], 1979, Computers and Intractibility: A Guide to the Theory of NP-Completeness
[3]  
Bein D., 2008, P 41 ANN HAW INT C S
[4]  
Berge C., 1985, Graphs and Hypergraphs
[5]   On biclique coverings [J].
Bezrukova, Sergei ;
Froncek, Dalibor ;
Rosenberg, Steven J. ;
Kovar, Petr .
DISCRETE MATHEMATICS, 2008, 308 (2-3) :319-323
[6]   THE CLIQUE-PARTITIONING PROBLEM [J].
BHASKER, J ;
SAMAD, T .
COMPUTERS & MATHEMATICS WITH APPLICATIONS, 1991, 22 (06) :1-11
[7]  
Bomze I. M., 1999, Handbook of combinatorial optimization, P1, DOI DOI 10.1007/978-1-4757-3023-4_1
[8]  
Brandes U., 2007, J EXP ALGORITHMICS, V12
[9]   ON CLIQUE COVERS AND INDEPENDENCE NUMBERS OF GRAPHS [J].
BRIGHAM, RC ;
DUTTON, RD .
DISCRETE MATHEMATICS, 1983, 44 (02) :139-144
[10]  
Duginov O, 2014, DISCRETE MATH THEOR, V16, P203