Comparison of global gene expression profiles of microdissected human foetal Leydig cells with their normal and hyperplastic adult equivalents

被引:11
作者
Lottrup, Grete [1 ]
Belling, Kirstine [2 ]
Leffers, Henrik [1 ]
Nielsen, John E. [1 ]
Dalgaard, Marlene D. [1 ,3 ,4 ]
Juul, Anders [1 ]
Skakkebaek, Niels E. [1 ]
Brunak, Soren [2 ,3 ]
Rajpert-De Meyts, Ewa [1 ]
机构
[1] Copenhagen Univ Hosp, Int Ctr Res & Training Endocrine Disrupt Male Rep, Rigshosp, Dept Growth & Reprod, 9 Blegdamsvej, DK-2100 Copenhagen, Denmark
[2] Univ Copenhagen, Fac Hlth & Med Sci, Novo Nordisk Fdn Ctr Prot Res, DK-2200 Copenhagen, Denmark
[3] Tech Univ Denmark DTU, Dept Syst Biol, Ctr Biol Sequence Anal, DK-2800 Lyngby, Denmark
[4] Tech Univ Denmark, Dept Biotechnol & Biomed, DTU Multiassay Core DMAC, DTU Bioengn, DK-2800 Lyngby, Denmark
关键词
Leydig cell; human testis; gene expression profiling; transcriptome; foetal Leydig cell; Leydig cell micronodules; Leydig cell hyperplasia; testicular germ cell tumours; TESTICULAR DYSGENESIS SYNDROME; CARCINOMA-IN-SITU; DIFFERENTIAL EXPRESSION; CANDIDATE GENES; TESTIS; BIOINFORMATICS; NORMALIZATION; GONOCYTES; BIOPSIES; BIOLOGY;
D O I
10.1093/molehr/gax012
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
STUDY QUESTION: Do human adult Leydig cells (ALCs) within hyperplastic micronodules display characteristics of foetal LCs (FLCs)? SUMMARY ANSWER: The gene expression profiles of FLCs and all ALC subgroups were clearly different, but there were no significant differences in expressed genes between the normally clustered and hyperplastic ALCs. WHAT IS KNOWN ALREADY: LCs are the primary androgen producing cells in males throughout development and appear in chronologically distinct populations; FLCs, neonatal LCs and ALCs. ALCs are responsible for progression through puberty and for maintenance of reproductive functions in adulthood. In patients with reproductive problems, such as infertility or testicular cancer, and especially in men with high gonadotrophin levels, LC function is often impaired, and LCs may cluster abnormally into hyperplastic micronodules (defined as clusters of > 15 LCs in a cross-section). STUDY DESIGN, SIZE, DURATION: A genome-wide microarray study of LCs microdissected from human foetal and adult tissue samples (n = 12). Additional tissue specimens (n = 15) were used for validation of the mRNA expression data at the protein level. PARTICIPANTS/MATERIALS, SETTING, METHODS: Frozen human tissue samples were used for the microarray study, including morphologically normal foetal (gestational week 10-11) testis samples, and adult testis specimens with normal LC distribution, LC micronodules or LC micronodules adjacent to hCG-producing testicular germ cell tumours. Transcriptome profiling was performed on Agilent whole human genome microarray 4 x 44 K chips. Microarray data pre-processing and statistical analysis were performed using the limma R/Bioconductor package in the R software, and differentially expressed genes were further analysed for gene set enrichment using the DAVID Bioinformatics software. Selected genes were studied at the protein level by immunohistochemistry. MAIN RESULTS AND THE ROLE OF CHANCE: The transcriptomes of FLCs and ALCs differed significantly from each other, whereas the profiles of the normally clustered and hyperplastic ALCs were similar despite morphological heterogeneity. The study revealed several genes not known previously to be expressed in LCs during early development, including sulfotransferase family 2A member 1 (SULT2A1), WNT1-inducible signalling pathway protein 2 (WISP2), hydroxyprostaglandin dehydrogenase (HPGD) and insulin-like growth factor 2 mRNA binding protein 1 (IGF2BP1), whose expression changes were validated at the protein level. LARGE SCALE DATA: The transcriptomic data are deposited in ArrayExpress (accession code E-MTAB-5453). LIMITATIONS, REASONS FOR CAUTION: The small number of biological replicates and the necessity of RNA amplification due to the scarcity of human tissues, especially foetal specimens, are the main limitations of the study. Heterogeneous subpopulations of LCs within micronodules were not discriminated during microdissection and might have affected the expression profiling. The study was constrained by the lack of availability of truly normal controls. Testis samples used as 'controls' displayed complete spermatogenesis and were from patients with germ cell neoplasia but with undetectable hCG and normal hormone levels. WIDER IMPLICATIONS OF THE FINDINGS: The changes in LC morphology and function observed in patients with reproductive disorders possibly reflect subtle changes in the expression of many genes rather than regulatory changes of single genes or pathways. The study provides new insights into the development and maturation of human LCs by the identification of a number of potential functional markers for FLC and ALC.
引用
收藏
页码:339 / 354
页数:16
相关论文
共 62 条
  • [1] [Anonymous], 1992, P SOC EXP BIOL MED
  • [2] CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING
    BENJAMINI, Y
    HOCHBERG, Y
    [J]. JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) : 289 - 300
  • [3] A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    Bolstad, BM
    Irizarry, RA
    Åstrand, M
    Speed, TP
    [J]. BIOINFORMATICS, 2003, 19 (02) : 185 - 193
  • [4] ENDOCRINE REGULATION AND COMMUNICATING FUNCTIONS OF THE LEYDIG-CELL
    DUFAU, ML
    [J]. ANNUAL REVIEW OF PHYSIOLOGY, 1988, 50 : 483 - 508
  • [5] Genetic variation, expression and ontogeny of sulfotransferase SULT2A1 in humans
    Ekstrom, L.
    Rane, A.
    [J]. PHARMACOGENOMICS JOURNAL, 2015, 15 (04) : 293 - 297
  • [6] The Reactome pathway Knowledgebase
    Fabregat, Antonio
    Sidiropoulos, Konstantinos
    Garapati, Phani
    Gillespie, Marc
    Hausmann, Kerstin
    Haw, Robin
    Jassal, Bijay
    Jupe, Steven
    Korninger, Florian
    McKay, Sheldon
    Matthews, Lisa
    May, Bruce
    Milacic, Marija
    Rothfels, Karen
    Shamovsky, Veronica
    Webber, Marissa
    Weiser, Joel
    Williams, Mark
    Wu, Guanming
    Stein, Lincoln
    Hermjakob, Henning
    D'Eustachio, Peter
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (D1) : D481 - D487
  • [7] Testicular function and bone metabolism-beyond testosterone
    Ferlin, Alberto
    Selice, Riccardo
    Carraro, Umberto
    Foresta, Carlo
    [J]. NATURE REVIEWS ENDOCRINOLOGY, 2013, 9 (09) : 548 - 554
  • [8] Germline polymorphisms in an enhancer of PSIP1 are associated with progression-free survival in epithelial ovarian cancer
    French, Juliet D.
    Johnatty, Sharon E.
    Lu, Yi
    Beesley, Jonathan
    Gao, Bo
    Kalimutho, Murugan
    Henderson, Michelle J.
    Russell, Amanda J.
    Kar, Siddhartha
    Chen, Xiaoqing
    Hillman, Kristine M.
    Kaufmann, Susanne
    Sivakumaran, Haran
    O'Reilly, Martin
    Wang, Chen
    Korbie, Darren J.
    Lambrechts, Diether
    Despierre, Evelyn
    Van Nieuwenhuysen, Els
    Lambrechts, Sandrina
    Vergote, Ignace
    Karlan, Beth
    Lester, Jenny
    Orsulic, Sandra
    Walsh, Christine
    Fasching, Peter A.
    Beckmann, Matthias W.
    Ekici, Arif B.
    Hein, Alexander
    Matsuo, Keitaro
    Hosono, Satoyo
    Pisterer, Jacobus
    Hillemanns, Peter
    Nakanishi, Toru
    Yatabe, Yasushi
    Goodman, Marc T.
    Lurie, Galina
    Matsuno, Rayna K.
    Thompson, Pamela J.
    Pejovic, Tanja
    Bean, Yukie
    Heitz, Florian
    Harter, Philipp
    du Bois, Andreas
    Schwaab, Ira
    Hogdall, Estrid
    Kjaer, Susanne K.
    Jensen, Allan
    Hogdall, Claus
    Lundvall, Lene
    [J]. ONCOTARGET, 2016, 7 (06) : 6353 - 6368
  • [9] Gene Ontology Consortium, 2015, NUCLEIC ACIDS RES, V43, pD1049
  • [10] Bioconductor: open software development for computational biology and bioinformatics
    Gentleman, RC
    Carey, VJ
    Bates, DM
    Bolstad, B
    Dettling, M
    Dudoit, S
    Ellis, B
    Gautier, L
    Ge, YC
    Gentry, J
    Hornik, K
    Hothorn, T
    Huber, W
    Iacus, S
    Irizarry, R
    Leisch, F
    Li, C
    Maechler, M
    Rossini, AJ
    Sawitzki, G
    Smith, C
    Smyth, G
    Tierney, L
    Yang, JYH
    Zhang, JH
    [J]. GENOME BIOLOGY, 2004, 5 (10)