SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules

被引:9827
作者
Daina, Antoine [1 ]
Michielin, Olivier [1 ,2 ,3 ]
Zoete, Vincent [1 ]
机构
[1] Swiss Inst Bioinformat, Mol Modeling Grp, Batiment Genopode, CH-1015 Lausanne, Switzerland
[2] CHU Vaudois, Dept Oncol, CH-1015 Lausanne, Switzerland
[3] Univ Lausanne, Ludwig Inst Canc Res, CH-1015 Lausanne, Switzerland
来源
SCIENTIFIC REPORTS | 2017年 / 7卷
关键词
SCREENING LIBRARIES; PREDICTION; DISCOVERY; SOLUBILITY; DATABASE; TRANSPORTERS; ABSORPTION; MODELS; BIOAVAILABILITY; CLASSIFICATION;
D O I
10.1038/srep42717
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
To be effective as a drug, a potent molecule must reach its target in the body in sufficient concentration, and stay there in a bioactive form long enough for the expected biologic events to occur. Drug development involves assessment of absorption, distribution, metabolism and excretion (ADME) increasingly earlier in the discovery process, at a stage when considered compounds are numerous but access to the physical samples is limited. In that context, computer models constitute valid alternatives to experiments. Here, we present the new SwissADME web tool that gives free access to a pool of fast yet robust predictive models for physicochemical properties, pharmacokinetics, drug-likeness and medicinal chemistry friendliness, among which in-house proficient methods such as the BOILED-Egg, iLOGP and Bioavailability Radar. Easy efficient input and interpretation are ensured thanks to a user-friendly interface through the login-free website http://www.swissadme.ch.Specialists, but also nonexpert in cheminformatics or computational chemistry can predict rapidly key parameters for a collection of molecules to support their drug discovery endeavours.
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页数:13
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共 77 条
  • [1] Revisiting the General Solubility Equation: In Silico Prediction of Aqueous Solubility Incorporating the Effect of Topographical Polar Surface Area
    Ali, Jogoth
    Camilleri, Patrick
    Brown, Marc B.
    Hutt, Andrew J.
    Kirton, Stewart B.
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2012, 52 (02) : 420 - 428
  • [2] The influence of lipophilicity in drug discovery and design
    Arnott, John A.
    Planey, Sonia Lobo
    [J]. EXPERT OPINION ON DRUG DISCOVERY, 2012, 7 (10) : 863 - 875
  • [3] New Substructure Filters for Removal of Pan Assay Interference Compounds (PAINS) from Screening Libraries and for Their Exclusion in Bioassays
    Baell, Jonathan B.
    Holloway, Georgina A.
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2010, 53 (07) : 2719 - 2740
  • [4] Lessons learnt from assembling screening libraries for drug discovery for neglected diseases
    Brenk, Ruth
    Schipani, Alessandro
    James, Daniel
    Krasowski, Agata
    Gilbert, Ian Hugh
    Frearson, Julie
    Wyatt, Paul Graham
    [J]. CHEMMEDCHEM, 2008, 3 (03) : 435 - 444
  • [5] CHARMM: The Biomolecular Simulation Program
    Brooks, B. R.
    Brooks, C. L., III
    Mackerell, A. D., Jr.
    Nilsson, L.
    Petrella, R. J.
    Roux, B.
    Won, Y.
    Archontis, G.
    Bartels, C.
    Boresch, S.
    Caflisch, A.
    Caves, L.
    Cui, Q.
    Dinner, A. R.
    Feig, M.
    Fischer, S.
    Gao, J.
    Hodoscek, M.
    Im, W.
    Kuczera, K.
    Lazaridis, T.
    Ma, J.
    Ovchinnikov, V.
    Paci, E.
    Pastor, R. W.
    Post, C. B.
    Pu, J. Z.
    Schaefer, M.
    Tidor, B.
    Venable, R. M.
    Woodcock, H. L.
    Wu, X.
    Yang, W.
    York, D. M.
    Karplus, M.
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2009, 30 (10) : 1545 - 1614
  • [6] Rules for Identifying Potentially Reactive or Promiscuous Compounds
    Bruns, Robert F.
    Watson, Ian A.
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2012, 55 (22) : 9763 - 9772
  • [7] Selecting Relevant Descriptors for Classification by Bayesian Estimates: A Comparison with Decision Trees and Support Vector Machines Approaches for Disparate Data Sets
    Carbon-Mangels, Miriam
    Hutter, Michael C.
    [J]. MOLECULAR INFORMATICS, 2011, 30 (10) : 885 - 895
  • [8] Molecular fingerprint similarity search in virtual screening
    Cereto-Massague, Adria
    Jose Ojeda, Maria
    Valls, Cristina
    Mulero, Miguel
    Garcia-Vallve, Santiago
    Pujadas, Gerard
    [J]. METHODS, 2015, 71 : 58 - 63
  • [9] LIBSVM: A Library for Support Vector Machines
    Chang, Chih-Chung
    Lin, Chih-Jen
    [J]. ACM TRANSACTIONS ON INTELLIGENT SYSTEMS AND TECHNOLOGY, 2011, 2 (03)
  • [10] admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties
    Cheng, Feixiong
    Li, Weihua
    Zhou, Yadi
    Shen, Jie
    Wu, Zengrui
    Liu, Guixia
    Lee, Philip W.
    Tang, Yun
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2012, 52 (11) : 3099 - 3105