The complete mitochondrial genome sequence of Buceros bicornis (Bucerotiformes: Bucerotidae)

被引:2
作者
Chen, Yanyan [1 ]
Li, Chunqing [1 ]
Yan, Haiya [1 ]
Xiao, Heng [1 ,2 ]
Chen, Shanyuan [1 ]
机构
[1] Yunnan Univ, Sch Life Sci, 2 North Cuihu Rd, Kunming 650091, Yunnan, Peoples R China
[2] Yunnan Univ, Key Lab Anim Genet Divers & Evolut High Educ Yunn, Kunming 650091, Yunnan, Peoples R China
关键词
Buceros bicornis; Mitochondrial genome; Next generation sequencing; GREAT HORNBILL;
D O I
10.1007/s12686-017-0803-4
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
Buceros bicornis (Bucerotiformes: Bucerotidae) has been listed as a near threatened species by the International Union for Conservation of Nature and Natural Resources (IUCN) due to over-hunting and habitat loss. Thus, it is a great challenge for us to efficiently protect the Buceros bicornis resource from extinct. Molecular biology research can provide the scientific basis for the conservation of key endangered species. In this work, we first reported the complete mitochondrial genome (mitogenome) sequence of Buceros bicornis by next-generation sequencing (NGS). The total length of the complete mitogenome was 17,117 bp and its overall base composition was estimated to be 30.2% for A, 23.5% for T, 32.3% for C and 14.0% for G, indicating an A + T (53.7%)-rich feature in the Buceros bicornis complete mitogenome. In addition, it contained the typical structure of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes (tRNAs) and a non-coding control region (D-loop region). The newly obtained mitogenome sequence seems to be useful for conservation biology and evolutionary studies on hornbill bird species, which would contribute to enrich the Buceros bicornis mitogenome resource and promote its biological research.
引用
收藏
页码:287 / 290
页数:4
相关论文
共 13 条
  • [1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [2] Animal mitochondrial genomes
    Boore, JL
    [J]. NUCLEIC ACIDS RESEARCH, 1999, 27 (08) : 1767 - 1780
  • [3] Isolation and characterization of microsatellite markers from the great hornbill, Buceros bicornis
    Chamutpong, Siriphatr
    Saito, Daichi S.
    Viseshakul, Nareerat
    Nishiumi, Isao
    Poonswad, Pilai
    Ponglikitmongkol, Mathurose
    [J]. MOLECULAR ECOLOGY RESOURCES, 2009, 9 (02) : 591 - 593
  • [4] Mitochondrial DNA as a marker of molecular diversity: a reappraisal
    Galtier, N.
    Nabholz, B.
    Glemin, S.
    Hurst, G. D. D.
    [J]. MOLECULAR ECOLOGY, 2009, 18 (22) : 4541 - 4550
  • [5] De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
    Haas, Brian J.
    Papanicolaou, Alexie
    Yassour, Moran
    Grabherr, Manfred
    Blood, Philip D.
    Bowden, Joshua
    Couger, Matthew Brian
    Eccles, David
    Li, Bo
    Lieber, Matthias
    MacManes, Matthew D.
    Ott, Michael
    Orvis, Joshua
    Pochet, Nathalie
    Strozzi, Francesco
    Weeks, Nathan
    Westerman, Rick
    William, Thomas
    Dewey, Colin N.
    Henschel, Robert
    Leduc, Richard D.
    Friedman, Nir
    Regev, Aviv
    [J]. NATURE PROTOCOLS, 2013, 8 (08) : 1494 - 1512
  • [6] NESTING HABITAT OF THE GREAT HORNBILL (BUCEROS BICORNIS) IN THE ANAIMALAI HILLS OF SOUTHERN INDIA
    James, Douglas A.
    Kannan, Ragupathy
    [J]. WILSON JOURNAL OF ORNITHOLOGY, 2009, 121 (03) : 485 - 492
  • [7] Reproductive behavior of the great hornbill (Buceros bicornis)
    Kozlowski, Corinne P.
    Bauman, Karen L.
    Asa, Cheryl S.
    [J]. ZOO BIOLOGY, 2015, 34 (04) : 328 - 334
  • [8] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    Lowe, TM
    Eddy, SR
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (05) : 955 - 964
  • [9] An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles
    Mindell, DP
    Sorenson, MD
    Dimcheff, DE
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 1998, 15 (11) : 1568 - 1571
  • [10] Naish D, 2008, CONDOR, V110, P810