Photo-assisted Fabrication of Ribosome Display Microarray

被引:4
作者
Kumal, Subhashini Raj [1 ]
Kobayashi, Ryo [1 ]
Ueno, Shingo [1 ,2 ]
Ichiki, Takanori [1 ,2 ]
机构
[1] Univ Tokyo, Sch Engn, Dept Bioengn, Bunkyo Ku, Tokyo 1138656, Japan
[2] Japan Sci & Technol Agcy, Core Res Evolut Sci & Technol, Kawaguchi, Saitama 3320012, Japan
关键词
ribosome display; ribosomal stalling; microarray and photo-crosslinker; IN-VITRO SELECTION; MESSENGER-RNA; FUNCTIONAL PROTEINS; TRANSLATION; TERMINATION; EVOLUTION; RELEASE; SYSTEM;
D O I
10.2494/photopolymer.27.459
中图分类号
O63 [高分子化学(高聚物)];
学科分类号
070305 ; 080501 ; 081704 ;
摘要
Ribosome display has been widely used for in vitro protein evolution, and the formation of a ternary complex, mRNA-ribosome-protein, is central to this technology as it displays the genotype-phenotype linkage. In conventional ribosome display methods, DNA with a native sequence containing stop codons cannot be used as a starting material as the ribosome in the ternary complex is primarily stalled by the removal of stop codons. Here, a new method for ribosome display is reported. This new method enables the use of DNA containing a stop codon as a starting material and presents the ribosome display on a microarray format with the assistance of a photo-crosslinker. This method is expected to be more advantageous than the conventional method as it allows the use of DNA with a native sequence without any modification, and since it is presented on a microarray format, it enables immediate functional identification and comparison between different proteins without any downstream processing.
引用
收藏
页码:459 / 465
页数:7
相关论文
共 23 条
[1]   Microintaglio Printing of In situ Synthesized Proteins Enables Rapid Printing of High-Density Protein Microarrays Directly from DNA Microarrays [J].
Biyani, Manish ;
Moriyasu, Junpei ;
Tanaka, Yoko ;
Sato, Shusuke ;
Ueno, Shingo ;
Ichiki, Takanori .
APPLIED PHYSICS EXPRESS, 2013, 6 (08)
[2]   Microintaglio Printing of Biomolecules and Its Application to In situ Production of Messenger Ribonucleic Acid Display Microarray [J].
Biyani, Manish ;
Osawa, Terutsune ;
Nemoto, Naoto ;
Ichiki, Takanori .
APPLIED PHYSICS EXPRESS, 2011, 4 (04)
[3]   In vitro selection and evolution of functional proteins by using ribosome display [J].
Hanes, J ;
Pluckthun, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (10) :4937-4942
[4]   Selecting and evolving functional proteins in vitro by ribosome display [J].
Hanes, J ;
Jermutus, L ;
Plückthun, A .
APPLICATIONS OF CHIMERIC GENES AND HYBRID PROTEINS, PT C, 2000, 328 :404-430
[5]   Antibody-ribosome-mRNA (ARM) complexes as efficient selection particles for in vitro display and evolution of antibody combining sites [J].
He, MY ;
Taussig, MJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (24) :5132-5134
[6]   Ribosome display:: next-generation display technologies for production of antibodies in vitro [J].
He, MY ;
Khan, F .
EXPERT REVIEW OF PROTEOMICS, 2005, 2 (03) :421-430
[7]  
Jackson Alison M., 2004, Briefings in Functional Genomics & Proteomics, V2, P308, DOI 10.1093/bfgp/2.4.308
[8]   Termination of translation: interplay of mRNA, rRNAs and release factors? [J].
Kisselev, L ;
Ehrenberg, M ;
Frolova, L .
EMBO JOURNAL, 2003, 22 (02) :175-182
[9]   Searching sequence space for high-affinity binding peptides using ribosome display [J].
Lamla, T ;
Erdmann, VA .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 329 (02) :381-388
[10]   AN IN-VITRO POLYSOME DISPLAY SYSTEM FOR IDENTIFYING LIGANDS FROM VERY LARGE PEPTIDE LIBRARIES [J].
MATTHEAKIS, LC ;
BHATT, RR ;
DOWER, WJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (19) :9022-9026