Inter-species interconnections in acid mine drainage microbial communities
被引:53
作者:
Comolli, Luis R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Struct Biol & Imaging Dept, Div Life Sci, Berkeley, CA 94720 USAUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Struct Biol & Imaging Dept, Div Life Sci, Berkeley, CA 94720 USA
Comolli, Luis R.
[1
]
Banfield, Jill F.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USAUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Struct Biol & Imaging Dept, Div Life Sci, Berkeley, CA 94720 USA
Banfield, Jill F.
[2
]
机构:
[1] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Struct Biol & Imaging Dept, Div Life Sci, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
Metagenomic studies are revolutionizing our understanding of microbes in the biosphere. They have uncovered numerous proteins of unknown function in tens of essentially unstudied lineages that lack cultivated representatives. Notably, few of these microorganisms have been visualized, and even fewer have been described ultra-structurally in their essentially intact, physiologically relevant states. Here, we present cryogenic transmission electron microscope (cryo-TEM) 2D images and 3D tomographic datasets for archaeal species from natural acid mine drainage (AMD) microbial communities. Ultrastructural findings indicate the importance of microbial interconnectedness via a range of mechanisms, including direct cytoplasmic bridges and pervasive pili. The data also suggest a variety of biological structures associated with cell-cell interfaces that lack explanation. Some may play roles in inter-species interactions. lnterdependences amongst the archaea may have confounded prior isolation efforts. Overall, the findings underline knowledge gaps related to archaeal cell components and highlight the likely importance of co-evolution in shaping microbial lineages.
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Rinke, Christian
;
Schwientek, Patrick
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Schwientek, Patrick
;
Sczyrba, Alexander
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Univ Bielefeld, Ctr Biotechnol, D-33602 Bielefeld, GermanyDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Sczyrba, Alexander
;
Ivanova, Natalia N.
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Ivanova, Natalia N.
;
Anderson, Iain J.
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Anderson, Iain J.
;
Cheng, Jan-Fang
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Cheng, Jan-Fang
;
Darling, Aaron
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Davis, Dept Evolut & Ecol, Davis, CA 95616 USA
Univ Technol Sydney, Inst I3, Ultimo, NSW 2007, AustraliaDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Darling, Aaron
;
Malfatti, Stephanie
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Malfatti, Stephanie
;
Swan, Brandon K.
论文数: 0引用数: 0
h-index: 0
机构:
Bigelow Lab Ocean Sci, East Boothbay, ME 04544 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Swan, Brandon K.
;
Gies, Esther A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ British Columbia, Dept Microbiol & Immunol, Vancouver, BC V6T 1Z3, Canada
Univ British Columbia, Grad Program Bioinformat, Vancouver, BC V6T 1Z3, CanadaDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Gies, Esther A.
;
Dodsworth, Jeremy A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Nevada, Sch Life Sci, Las Vegas, NV 89154 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Dodsworth, Jeremy A.
;
Hedlund, Brian P.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Nevada, Sch Life Sci, Las Vegas, NV 89154 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Hedlund, Brian P.
;
Tsiamis, George
论文数: 0引用数: 0
h-index: 0
机构:
Univ Patras, Dept Environm & Nat Resources Management, Agrinion 30100, TK, GreeceDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Tsiamis, George
;
Sievert, Stefan M.
论文数: 0引用数: 0
h-index: 0
机构:
Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Sievert, Stefan M.
;
Liu, Wen-Tso
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Civil & Environm Engn, Urbana, IL 61802 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Liu, Wen-Tso
;
Eisen, Jonathan A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Davis, Dept Evolut & Ecol, Davis, CA 95616 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Eisen, Jonathan A.
;
Hallam, Steven J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ British Columbia, Dept Microbiol & Immunol, Vancouver, BC V6T 1Z3, Canada
Univ British Columbia, Grad Program Bioinformat, Vancouver, BC V6T 1Z3, CanadaDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Hallam, Steven J.
;
Kyrpides, Nikos C.
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Kyrpides, Nikos C.
;
Stepanauskas, Ramunas
论文数: 0引用数: 0
h-index: 0
机构:
Bigelow Lab Ocean Sci, East Boothbay, ME 04544 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Stepanauskas, Ramunas
;
Rubin, Edward M.
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Rubin, Edward M.
;
Hugenholtz, Philip
论文数: 0引用数: 0
h-index: 0
机构:
Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, St Lucia, Qld 4072, Australia
Univ Queensland, Inst Mol Biosci, St Lucia, Qld 4072, AustraliaDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Hugenholtz, Philip
;
Woyke, Tanja
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
机构:
Univ Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
Sharon, Itai
;
Morowitz, Michael J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Sch Med, Pittsburgh, PA 15224 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
Morowitz, Michael J.
;
Thomas, Brian C.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
Thomas, Brian C.
;
Costello, Elizabeth K.
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Microbiol & Immunol, Stanford, CA 94305 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
Costello, Elizabeth K.
;
Relman, David A.
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Microbiol & Immunol, Stanford, CA 94305 USA
Stanford Univ, Sch Med, Dept Med, Stanford, CA 94305 USA
VA Palo Alto Hlth Care Syst, Palo Alto, CA 94304 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
Relman, David A.
;
Banfield, Jillian F.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Rinke, Christian
;
Schwientek, Patrick
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Schwientek, Patrick
;
Sczyrba, Alexander
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Univ Bielefeld, Ctr Biotechnol, D-33602 Bielefeld, GermanyDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Sczyrba, Alexander
;
Ivanova, Natalia N.
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Ivanova, Natalia N.
;
Anderson, Iain J.
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Anderson, Iain J.
;
Cheng, Jan-Fang
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Cheng, Jan-Fang
;
Darling, Aaron
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Davis, Dept Evolut & Ecol, Davis, CA 95616 USA
Univ Technol Sydney, Inst I3, Ultimo, NSW 2007, AustraliaDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Darling, Aaron
;
Malfatti, Stephanie
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Malfatti, Stephanie
;
Swan, Brandon K.
论文数: 0引用数: 0
h-index: 0
机构:
Bigelow Lab Ocean Sci, East Boothbay, ME 04544 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Swan, Brandon K.
;
Gies, Esther A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ British Columbia, Dept Microbiol & Immunol, Vancouver, BC V6T 1Z3, Canada
Univ British Columbia, Grad Program Bioinformat, Vancouver, BC V6T 1Z3, CanadaDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Gies, Esther A.
;
Dodsworth, Jeremy A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Nevada, Sch Life Sci, Las Vegas, NV 89154 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Dodsworth, Jeremy A.
;
Hedlund, Brian P.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Nevada, Sch Life Sci, Las Vegas, NV 89154 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Hedlund, Brian P.
;
Tsiamis, George
论文数: 0引用数: 0
h-index: 0
机构:
Univ Patras, Dept Environm & Nat Resources Management, Agrinion 30100, TK, GreeceDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Tsiamis, George
;
Sievert, Stefan M.
论文数: 0引用数: 0
h-index: 0
机构:
Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Sievert, Stefan M.
;
Liu, Wen-Tso
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Civil & Environm Engn, Urbana, IL 61802 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Liu, Wen-Tso
;
Eisen, Jonathan A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Davis, Dept Evolut & Ecol, Davis, CA 95616 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Eisen, Jonathan A.
;
Hallam, Steven J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ British Columbia, Dept Microbiol & Immunol, Vancouver, BC V6T 1Z3, Canada
Univ British Columbia, Grad Program Bioinformat, Vancouver, BC V6T 1Z3, CanadaDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Hallam, Steven J.
;
Kyrpides, Nikos C.
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Kyrpides, Nikos C.
;
Stepanauskas, Ramunas
论文数: 0引用数: 0
h-index: 0
机构:
Bigelow Lab Ocean Sci, East Boothbay, ME 04544 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Stepanauskas, Ramunas
;
Rubin, Edward M.
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Rubin, Edward M.
;
Hugenholtz, Philip
论文数: 0引用数: 0
h-index: 0
机构:
Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, St Lucia, Qld 4072, Australia
Univ Queensland, Inst Mol Biosci, St Lucia, Qld 4072, AustraliaDOE Joint Genome Inst, Walnut Creek, CA 94598 USA
Hugenholtz, Philip
;
Woyke, Tanja
论文数: 0引用数: 0
h-index: 0
机构:
DOE Joint Genome Inst, Walnut Creek, CA 94598 USADOE Joint Genome Inst, Walnut Creek, CA 94598 USA
机构:
Univ Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
Sharon, Itai
;
Morowitz, Michael J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Sch Med, Pittsburgh, PA 15224 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
Morowitz, Michael J.
;
Thomas, Brian C.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
Thomas, Brian C.
;
Costello, Elizabeth K.
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Microbiol & Immunol, Stanford, CA 94305 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
Costello, Elizabeth K.
;
Relman, David A.
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Microbiol & Immunol, Stanford, CA 94305 USA
Stanford Univ, Sch Med, Dept Med, Stanford, CA 94305 USA
VA Palo Alto Hlth Care Syst, Palo Alto, CA 94304 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA
Relman, David A.
;
Banfield, Jillian F.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA