Ultrahigh-Throughput Improvement and Discovery of Enzymes Using Droplet-Based Microfluidic Screening

被引:42
作者
Autour, Alexis [1 ]
Ryckelynck, Michael [1 ]
机构
[1] Univ Strasbourg, CNRS, Architecture & Reactivite ARN, UPR 9002, F-67000 Strasbourg, France
关键词
droplet-based microfluidics; high-throughput screening; enzyme improvement; directed evolution; single-cell; FLUORINATED PICKERING EMULSIONS; POLYMERASE-CHAIN-REACTION; CELL-LYSATE ASSAYS; DIRECTED EVOLUTION; SINGLE CELLS; CONCENTRATION GRADIENT; MOLECULAR-TRANSPORT; PICOLITER DROPLETS; PROTEIN EXPRESSION; FLOW;
D O I
10.3390/mi8040128
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Enzymes are extremely valuable tools for industrial, environmental, and biotechnological applications and there is a constant need for improving existing biological catalysts and for discovering new ones. Screening microbe or gene libraries is an efficient way of identifying new enzymes. In this view, droplet-based microfluidics appears to be one of the most powerful approaches as it allows inexpensive screenings in well-controlled conditions and an ultrahigh-throughput regime. This review aims to introduce the main microfluidic devices and concepts to be considered for such screening before presenting and discussing the latest successful applications of the technology for enzyme discovery.
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页数:21
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共 157 条
[61]   Biocompatible surfactants for water-in-fluorocarbon emulsions [J].
Holtze, C. ;
Rowat, A. C. ;
Agresti, J. J. ;
Hutchison, J. B. ;
Angile, F. E. ;
Schmitz, C. H. J. ;
Koster, S. ;
Duan, H. ;
Humphry, K. J. ;
Scanga, R. A. ;
Johnson, J. S. ;
Pisignano, D. ;
Weitz, D. A. .
LAB ON A CHIP, 2008, 8 (10) :1632-1639
[62]   Microfluidic screening and whole-genome sequencing identifies mutations associated with improved protein secretion by yeast [J].
Huang, Mingtao ;
Bai, Yunpeng ;
Sjostrom, Staffan L. ;
Hallstrom, Bjorn M. ;
Liu, Zihe ;
Petranovic, Dina ;
Uhlen, Mathias ;
Joensson, Haakan N. ;
Andersson-Svahn, Helene ;
Nielsen, Jens .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (34) :E4689-E4696
[63]   Quantitative detection of protein expression in single cells using droplet microfluidics [J].
Huebner, A. ;
Srisa-Art, M. ;
Holt, D. ;
Abell, C. ;
Hollfelder, F. ;
deMello, A. J. ;
Edel, J. B. .
CHEMICAL COMMUNICATIONS, 2007, (12) :1218-1220
[64]   Static microdroplet arrays: a microfluidic device for droplet trapping, incubation and release for enzymatic and cell-based assays [J].
Huebner, Ansgar ;
Bratton, Dan ;
Whyte, Graeme ;
Yang, Min ;
deMello, Andrew J. ;
Abell, Chris ;
Hollfelder, Florian .
LAB ON A CHIP, 2009, 9 (05) :692-698
[65]   High-throughput strategies for the discovery and engineering of enzymes for biocatalysis [J].
Jacques, Philippe ;
Bechet, Max ;
Bigan, Muriel ;
Caly, Delphine ;
Chataigne, Gabrielle ;
Coutte, Francois ;
Flahaut, Christophe ;
Heuson, Egon ;
Leclere, Valerie ;
Lecouturier, Didier ;
Phalip, Vincent ;
Ravallec, Rozenn ;
Dhulster, Pascal ;
Froidevaux, Renato .
BIOPROCESS AND BIOSYSTEMS ENGINEERING, 2017, 40 (02) :161-180
[66]   Creation of Stepwise Concentration Gradient in Picoliter Droplets for Parallel Reactions of Matrix Metalloproteinase II and IX [J].
Jambovane, Sachin ;
Kim, Duck Jong ;
Duin, Evert C. ;
Kim, Se-Kwon ;
Hong, Jong Wook .
ANALYTICAL CHEMISTRY, 2011, 83 (09) :3358-3364
[67]   Key Factors for Stable Retention of Fluorophores and Labeled Biomolecules in Droplet-Based Microfluidics [J].
Janiesch, Jan-Willi ;
Weiss, Marian ;
Kannenberg, Gerri ;
Hannabuss, Jonathon ;
Surrey, Thomas ;
Platzman, Ilia ;
Spatz, Joachim P. .
ANALYTICAL CHEMISTRY, 2015, 87 (04) :2063-2067
[68]   Forty years of in vitro evolution [J].
Joyce, Gerald F. .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2007, 46 (34) :6420-6436
[69]   A simple method to evaluate the biochemical compatibility of oil/surfactant mixtures for experiments in microdroplets [J].
Kaltenbach, Miriam ;
Devenish, Sean R. A. ;
Hollfelder, Florian .
LAB ON A CHIP, 2012, 12 (20) :4185-4192
[70]   Miniaturizing chemistry and biology in microdroplets [J].
Kelly, Bernard T. ;
Baret, Jean-Christophe ;
Taly, Valerie ;
Griffiths, Andrew D. .
CHEMICAL COMMUNICATIONS, 2007, (18) :1773-1788