Draft Genome of the European Mouflon (Ovis orientalis musimon)

被引:3
作者
Su, Rui [1 ,2 ,3 ,4 ,5 ]
Qiao, Xian [1 ]
Gao, Yun [6 ]
Li, Xiaokai [1 ]
Jiang, Wei [1 ]
Chen, Wei [7 ,8 ]
Fan, Yixing [1 ]
Zheng, Bingwu [9 ]
Zhang, Yanjun [1 ,2 ,3 ,4 ]
Liu, Zhihong [1 ,2 ,3 ,4 ]
Wang, Ruijun [1 ,2 ,3 ,4 ]
Wang, Zhiying [1 ,2 ,3 ,4 ]
Wang, Zhixin [1 ,2 ,3 ,4 ]
Wan, Wenting [10 ]
Dong, Yang [7 ,8 ]
Li, Jinquan [1 ,2 ,3 ,4 ]
机构
[1] Inner Mongolia Agr Univ, Coll Anim Sci, Hohhot, Peoples R China
[2] Key Lab Anim Genet Breeding & Reprod, Hohhot, Inner Mongolia, Peoples R China
[3] Minist Agr, Key Lab Mutton Sheep Genet & Breeding, Hohhot, Peoples R China
[4] Engn Res Ctr Goat Genet & Breeding, Hohhot, Inner Mongolia, Peoples R China
[5] Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming, Yunnan, Peoples R China
[6] NOWBIO Technol Co Ltd, Kunming, Yunnan, Peoples R China
[7] Yunnan Agr Univ, Coll Biol Big Data, Kunming, Yunnan, Peoples R China
[8] Yunnan Res Inst Local Plateau Agr & Ind, Kunming, Yunnan, Peoples R China
[9] Hohhot Gardens Management Bur, Daqingshan Wild Anim Pk, Hohhot, Peoples R China
[10] Northwestern Polytech Univ, Key Lab Space Biosci & Biotechnol, Ctr Ecol & Environm Sci, Xian, Peoples R China
基金
中国国家自然科学基金;
关键词
mouflon; Ovis orientalis musimon; Illumina sequencing; de novo genome assembly; genus Ovis; DOMESTIC SHEEP; GLACIAL CYCLES; GENE; EXPRESSION; PROGRAM; WILD; PREDICTION; INFERENCE; HISTORY; TRAITS;
D O I
10.3389/fgene.2020.533611
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Mouflon (Ovis orientalis) with its huge and beautiful horns is considered as one of the ancestors of domesticated sheep. The European mouflon (Ovis orientalis musimon) is in the Asiatic mouflon (O. orientalis) clade. In order to provide novel genome information for mouflon, moreover promote genetic analysis of genus Ovis both domestic and wild, we propose to sequence the mouflon genome. We assembled the highly heterozygous mouflon genome based on Illumina HiSeq platform using the next-generation sequencing technology. Finally, the draft genome we accessed approximately 2.69 Gb (42.15% GC), while N50 sizes of contig and scaffold are 110.1 kb and 10.4 Mb, respectively. The contiguity of this assembly is obviously better than earlier versions. Further analyses predicted 20,814 protein-coding genes in the mouflon genome and 12,390 shared gene families among bovine species. It is estimated that the divergence time between O. orientalis musimon and Ovis aries was 7.6 million years ago. The draft mouflon genome assembly will provide data support and theoretical basis for various investigations of the genus Ovis species in future.
引用
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页数:7
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