Characterization of the Arabidopsis thaliana exocyst complex gene families by phylogenetic, expression profiling, and subcellular localization studies

被引:71
作者
Chong, Yolanda T. [1 ,2 ]
Gidda, Satinder K. [3 ]
Sanford, Chris [4 ]
Parkinson, John [4 ]
Mullen, Robert T. [3 ]
Goring, Daphne R. [1 ,2 ]
机构
[1] Univ Toronto, Dept Cell & Syst Biol, Toronto, ON M5S 3B2, Canada
[2] Univ Toronto, Ctr Anal Genome Evolut & Funct, Toronto, ON M5S 3B2, Canada
[3] Univ Guelph, Dept Mol & Cellular Biol, Guelph, ON N1G 2W1, Canada
[4] Hosp Sick Children, Program Mol Struct & Funct, Toronto, ON M5G 1L7, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
evolution; exocyst; expression profiling; plants; protein complex (Sec3; Sec5; Sec6; Sec8; Sec10; Sec15; Exo70 and Exo84); MEMBRANE TRAFFICKING; DUPLICATE GENES; SUBUNIT; GENOME; POLYPLOIDY; EVOLUTION; RESOURCE; PLANTS; COMPARTMENTS; DIVERGENCE;
D O I
10.1111/j.1469-8137.2009.03070.x
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
P>The exocyst is a complex of eight proteins (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p and Exo84p) involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. Here, the plant exocyst complex was explored in phylogenetic, expression, and subcellular localization studies. Evolutionary relationships of predicted exocyst subunits were examined in the complete genomes of Arabidopsis thaliana, Oryza sativa, Populus trichocarpa and Physcomitrella patens. Furthermore, detailed expression profiling of the A. thaliana microarray databases was performed and subcellular localization patterns were studied. Several plant exocyst subunit genes appear to have undergone gene expansion in a common ancestor and subsequent duplication events in independent plant lineages. Expression profiling revealed that the A. thaliana Exo70 gene family exhibits dynamic expression patterns, while the remaining exocyst subunit genes displayed more static profiles. Subcellular localization patterns for A. thaliana exocyst subunits ranged from cytosolic to endosomal compartments (with enrichment in the early endosomes and the trans-Golgi network). Interestingly, two endosomal-localized AtExo70 proteins also recruited other exocyst subunits to these compartments. Overall subcellular localization patterns were observed that were also found in yeast and animal cells, and this, coupled with the evolutionary relationships, suggests that the exocyst may perform similar conserved functions in plants.
引用
收藏
页码:401 / 419
页数:19
相关论文
共 77 条
[1]   DEVELOPMENT AND APPLICATION OF AN IN-VIVO PLANT PEROXISOME IMPORT SYSTEM [J].
BANJOKO, A ;
TRELEASE, RN .
PLANT PHYSIOLOGY, 1995, 107 (04) :1201-1208
[2]   AtVPS45 complex formation at the trans-Golgi network [J].
Bassham, DC ;
Sanderfoot, AA ;
Kovaleva, V ;
Zheng, HY ;
Raikhel, NV .
MOLECULAR BIOLOGY OF THE CELL, 2000, 11 (07) :2251-2265
[3]   Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution [J].
Blanc, G ;
Wolfe, KH .
PLANT CELL, 2004, 16 (07) :1679-1691
[4]   A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome [J].
Blanc, G ;
Hokamp, K ;
Wolfe, KH .
GENOME RESEARCH, 2003, 13 (02) :137-144
[5]   The Drosophila homolog of the Exo84 exocyst subunit promotes apical epithelial identity [J].
Blankenship, J. Todd ;
Fuller, Margaret T. ;
Zallen, Jennifer A. .
JOURNAL OF CELL SCIENCE, 2007, 120 (17) :3099-3110
[6]   Vesicles carry most exocyst subunits to exocytic sites marked by the remaining two subunits, Sec3p and Exo70p [J].
Boyd, C ;
Hughes, T ;
Pypaert, M ;
Novick, P .
JOURNAL OF CELL BIOLOGY, 2004, 167 (05) :889-901
[7]  
Brandizzi Federica, 2003, Curr Protoc Cell Biol, VChapter 1, DOI 10.1002/0471143030.cb0107s19
[8]   The brain exocyst complex interacts with RaIA in a GTP-dependent manner [J].
Brymora, A ;
Valova, VA ;
Larsen, MR ;
Roufogalis, BD ;
Robinson, PJ .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (32) :29792-29797
[9]   The vegetative vacuole proteorne of Arabidopsis thaliana reveals predicted and unexpected proteins [J].
Carter, C ;
Pan, SQ ;
Zouhar, J ;
Avila, EL ;
Girke, T ;
Raikhel, NV .
PLANT CELL, 2004, 16 (12) :3285-3303
[10]   Membrane trafficking in plants: new discoveries and approaches [J].
Carter, CJ ;
Bednarek, SY ;
Raikhel, NV .
CURRENT OPINION IN PLANT BIOLOGY, 2004, 7 (06) :701-707