Towards solvation simulations with a combined ab initio molecular dynamics and molecular mechanics approach

被引:23
作者
Woo, TK
Blöchl, PE
Ziegler, T
机构
[1] Univ Calgary, Dept Chem, Calgary, AB T2N 1N4, Canada
[2] IBM Corp, Div Res, Zurich Res Lab, CH-8803 Ruschlikon, Switzerland
来源
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM | 2000年 / 506卷
关键词
Car-Parrinello; ab initio molecular dynamics; combined quantum mechanics and molecular mechanics; solvation; projector augmented wave method;
D O I
10.1016/S0166-1280(00)00424-3
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The combined quantum mechanics and molecular mechanics method has been implemented within the framework of the Projector Augmented Wave Car-Parrinello method for explicit solvent simulations. The approach has been evaluated for its ability to represent the 'true' intermolecular interaction potential and its ability to perform energy conserving dynamics. The combined QM/MM potential has been parameterized to reproduce 27 hydrogen bonded bimolecular interactions between a water molecule and a set of organic molecules calculated wholly at the density function theory level. For this training set, a root-mean-square deviation of 0.8 kcal/mol was achieved for the interaction energies that ranged from -0.3 to -29.3 kcal/mol. (C) 2000 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:313 / 334
页数:22
相关论文
共 45 条
[1]  
Allen M. P., 1987, COMPUTER SIMULATIONS, DOI [10.1093/oso/9780198803195.001.0001, DOI 10.1093/OSO/9780198803195.001.0001]
[2]   PARTITIONING AND CHARACTERIZATION OF MOLECULAR CHARGE DISTRIBUTIONS [J].
BADER, RFW ;
BEDDALL, PM ;
CADE, PE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1971, 93 (13) :3095-+
[3]   Hybrid models for combined quantum mechanical and molecular mechanical approaches [J].
Bakowies, D ;
Thiel, W .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (25) :10580-10594
[4]  
Bakowies D, 1996, J COMPUT CHEM, V17, P87, DOI 10.1002/(SICI)1096-987X(19960115)17:1<87::AID-JCC8>3.0.CO
[5]  
2-X
[6]   A WELL-BEHAVED ELECTROSTATIC POTENTIAL BASED METHOD USING CHARGE RESTRAINTS FOR DERIVING ATOMIC CHARGES - THE RESP MODEL [J].
BAYLY, CI ;
CIEPLAK, P ;
CORNELL, WD ;
KOLLMAN, PA .
JOURNAL OF PHYSICAL CHEMISTRY, 1993, 97 (40) :10269-10280
[7]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[8]  
Berendsen H., 1981, INTERMOLECULAR FORCE, V331, P331, DOI [DOI 10.1007/978-94-015-7658-1_21, 10.1007/978-94-015-7658, DOI 10.1007/978-94-015-7658]
[9]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[10]   IMPROVED TETRAHEDRON METHOD FOR BRILLOUIN-ZONE INTEGRATIONS [J].
BLOCHL, PE ;
JEPSEN, O ;
ANDERSEN, OK .
PHYSICAL REVIEW B, 1994, 49 (23) :16223-16233