Identification of a single peridinin sensing Chl-a excitation in reconstituted PCP by crystallography and spectroscopy

被引:71
作者
Schulte, Tim [2 ]
Niedzwiedzki, Dariusz M. [1 ]
Birge, Robert R. [1 ]
Hiller, Roger G. [3 ]
Polivka, Tomas [4 ,5 ]
Hofmann, Eckhard [2 ]
Frank, Harry A. [1 ]
机构
[1] Univ Connecticut, Dept Chem, Storrs, CT 06269 USA
[2] Ruhr Univ Bochum, Dept Biol & Biotechnol, D-44780 Bochum, Germany
[3] Macquarie Univ, Fac Sci, Dept Biol, N Ryde, NSW 2109, Australia
[4] Univ S Bohemia, Inst Phys Biol, Nove Hrady 37333, Czech Republic
[5] Acad Sci Czech Republic, Ctr Biol, Ceske Budejovice, Czech Republic
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
light harvesting; peridinin; protein crystallography; refolding; transient absorption spectroscopy; LIGHT-HARVESTING COMPLEX; AMPHIDINIUM-CARTERAE; ENERGY-TRANSFER; CHLOROPHYLL-PROTEIN; CRYSTAL-STRUCTURE; ABSORPTION-SPECTROSCOPY; MOLECULAR REPLACEMENT; TRANSIENT ABSORPTION; TRIPLET-STATE; MAIN-FORM;
D O I
10.1073/pnas.0908938106
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The peridinin-chlorophyll a-protein (PCP) of dinoflagellates is unique among the large variety of natural photosynthetic light-harvesting systems. In contrast to other chlorophyll protein complexes, the soluble PCP is located in the thylakoid lumen, and the carotenoid pigments outnumber the chlorophylls. The structure of the PCP complex consists of two symmetric domains, each with a central chlorophyll a (Chl-a) surrounded by four peridinin molecules. The protein provides distinctive surroundings for the pigment molecules, and in PCP, the specific environment around each peridinin results in overlapping spectral line shapes, suggestive of different functions within the protein. One particular Per, Per-614, is hypothesized to show the strongest electronic interaction with the central Chl-a. We have performed an in vitro reconstitution of pigments into recombinant PCP apo-protein (RFPCP) and into a mutated protein with an altered environment near Per-614. Steady-state and transient optical spectroscopic experiments comparing the RFPCP complex with the reconstituted mutant protein identify specific amino acid-induced spectral shifts. The spectroscopic assignments are reinforced by a determination of the structures of both RFPCP and the mutant by x-ray crystallography to a resolution better than 1.5 angstrom. RFPCP and mutated RFPCP are unique in representing crystal structures of in vitro reconstituted light-harvesting pigment-protein complexes.
引用
收藏
页码:20764 / 20769
页数:6
相关论文
共 45 条
[1]   Triplet state dynamics in peridinin-chlorophyll-a-protein:: A new pathway of photoprotection in LHCs? [J].
Alexandre, Maxime T. A. ;
Luehrs, Daniel C. ;
van Stokkum, Ivo H. M. ;
Hiller, Roger ;
Groot, Marie-Louise ;
Kennis, John T. M. ;
Van Grondelle, Rienk .
BIOPHYSICAL JOURNAL, 2007, 93 (06) :2118-2128
[2]   Singlet and triplet energy transfer in the peridinin-chlorophyll a protein from Amphidinium carterae [J].
Bautista, JA ;
Hiller, RG ;
Sharples, FP ;
Gosztola, D ;
Wasielewski, M ;
Frank, HA .
JOURNAL OF PHYSICAL CHEMISTRY A, 1999, 103 (14) :2267-2273
[3]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[4]   Structure-based calculations of the optical spectra of the light-harvesting peridinin-chlorophyll-protein complexes from Amphidinium carterae and Heterocapsa pygmaea [J].
Carbonera, D ;
Giacometti, G ;
Segre, U ;
Hofmann, E ;
Hiller, RG .
JOURNAL OF PHYSICAL CHEMISTRY B, 1999, 103 (30) :6349-6356
[5]   The architecture and function of the light-harvesting apparatus of purple bacteria:: from single molecules to in vivo membranes [J].
Cogdell, Richard J. ;
Gall, Andrew ;
Koehler, Juergen .
QUARTERLY REVIEWS OF BIOPHYSICS, 2006, 39 (03) :227-324
[6]  
Collaborative Computational Project Number 4, 1994, ACTA CRYSTALLOGR, V50, P760
[7]   Excitation transfer in the peridinin-chlorophyll-protein of Amphidinium carterae [J].
Damjanovic, A ;
Ritz, T ;
Schulten, K .
BIOPHYSICAL JOURNAL, 2000, 79 (04) :1695-1705
[8]   Mechanism of energy transfer from carotenoids to Bacteriochlorophyll:: Light-harvesting by carotenoids having different extents of π-electron conjugation incorporated into the B850 antenna complex from the carotenoidless bacterium Rhodobacter sphaeroides R-26.1 [J].
Desamero, RZB ;
Chynwat, V ;
van der Hoef, I ;
Jansen, FJ ;
Lugtenburg, J ;
Gosztola, D ;
Wasielewski, MR ;
Cua, A ;
Bocian, DF ;
Frank, HA .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (42) :8151-8162
[9]   Identification by time-resolved EPR of the peridinins directly involved in chlorophyll triplet quenching in the peridinin-chlorophyll a-protein from Amphidinium carterae [J].
Di Valentin, Marilena ;
Ceola, Stefano ;
Salvadori, Enrico ;
Agostini, Giancarlo ;
Carbonera, Donatella .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2008, 1777 (02) :186-195
[10]   Coot:: model-building tools for molecular graphics [J].
Emsley, P ;
Cowtan, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2126-2132