Understanding totally asymmetric simple-exclusion-process transport on networks: Generic analysis via effective rates and explicit vertices

被引:48
作者
Embley, Ben [1 ]
Parmeggiani, Andrea [2 ]
Kern, Norbert [3 ]
机构
[1] Univ Manchester, Sch Chem Engn & Analyt Sci, Manchester M60 1QD, Lancs, England
[2] Univ Montpellier 2, CNRS, Lab Dynam Interact Membranaires Normales & Pathol, UMR 5235,CC107, F-34095 Montpellier 5, France
[3] Univ Montpellier 2, CNRS, UMR 5587, Lab Colloides Verres & Nanomat,CC069, F-34095 Montpellier, France
来源
PHYSICAL REVIEW E | 2009年 / 80卷 / 04期
关键词
lattice theory; network theory (graphs); network topology; transport processes; PHASE-TRANSITIONS; MOLECULAR MOTORS; MODEL; FLUCTUATIONS; DIFFUSION; PARTICLE; KINETICS; COLLOIDS; DIAGRAM; PHYSICS;
D O I
10.1103/PhysRevE.80.041128
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
In this paper we rationalize relevant features of totally asymmetric simple-exclusion processes on topologies more complex than a single segment. We present a mean-field framework, exploiting the previously introduced notion of effective rates, which we express in terms of the average particle density on explicitly introduced junction sites. It allows us to construct the phase behavior as well as the current-density characteristic from well-known results for a linear totally asymmetric simple-exclusion-process segment in a very systematic and generic way. We validate the approach by studying a fourfold vertex in all variations in the number of entering/exiting segments and compare our predictions to simulation data. Generalizing the notion of particle-hole symmetry to take into account the topology at a junction shows that the average particle density at the junction constitutes a relevant directly observable parameter which gives detailed insight into the transport process. This is illustrated by a complete study of a simple network with figure-of-eight topology. Finally we generalize the approach to handle rate bias at a junction and discuss the surprisingly rich phenomenology of a biased figure-of-eight structure. This example highlights that the proposed framework is generic and readily extends to other topologies.
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页数:22
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