The complete mitochondrial genome of Pareuchiloglanis gongshanensis (Siluriformes, Sisoridae, Pareuchiloglanis): genome characterization and phylogenetic analysis

被引：2

作者：

Li, Bo ^{[1
]}

Tian, Zhifu ^{[2
]}

Qin, Ya ^{[1
]}

Hao, Meng ^{[1
]}

Zhang, Jiabo ^{[1
]}

机构：

[1] Huazhong Agr Univ, Coll Fisheries, Wuhan 430070, Peoples R China

[2] Changjiang Water Resources Protect Inst, Wuhan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2016年 / 1卷 / 01期

关键词：

Control region; mitochondrial genome; Pareuchiloglanis gongshanensis; phylogenetic relationship; ORGANIZATION; SEQUENCE;

D O I：

10.1080/23802359.2015.1137822

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Pareuchiloglanis gongshanensis, a small-sized benthic fish, distributed in southwest China. In the present study, the complete mitochondrial genome of P. gongshanensis was sequenced to be 16 588 bp in length, including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, a control region and the origin of the light strand replication. The overall nucleotide composition was 30.70% A, 24.11% T, 29.16% C and 16.02% G, with an A+T bias of 54.82%. The gene composition and the structural arrangement of the P. gongshanensis complete mitochondrial DNA were identical to most of the other vertebrates. This will provide a useful tool for understanding the genetic diversity, population structure and conservation status of P. gongshanensis in the future.

引用

页码：58 / 59

页数：2

共 8 条

[1] SEQUENCE AND ORGANIZATION OF THE HUMAN MITOCHONDRIAL GENOME [J].

ANDERSON, S ;

BANKIER, AT ;

BARRELL, BG ;

DEBRUIJN, MHL ;

COULSON, AR ;

DROUIN, J ;

EPERON, IC ;

NIERLICH, DP ;

ROE, BA ;

SANGER, F ;

SCHREIER, PH ;

SMITH, AJH ;

STADEN, R ;

YOUNG, IG .

NATURE, 1981, 290 (5806) :457-465

[2] SEQUENCE AND GENE ORGANIZATION OF MOUSE MITOCHONDRIAL-DNA [J].

BIBB, MJ ;

VANETTEN, RA ;

WRIGHT, CT ;

WALBERG, MW ;

CLAYTON, DA .

CELL, 1981, 26 (02) :167-180

[3] MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline [J].

Iwasaki, Wataru ;

Fukunaga, Tsukasa ;

Isagozawa, Ryota ;

Yamada, Koichiro ;

Maeda, Yasunobu ;

Satoh, Takashi P. ;

Sado, Tetsuya ;

Mabuchi, Kohji ;

Takeshima, Hirohiko ;

Miya, Masaki ;

Nishida, Mutsumi .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (11) :2531-2540

[4] MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences [J].

Kumar, Sudhir ;

Nei, Masatoshi ;

Dudley, Joel ;

Tamura, Koichiro .

BRIEFINGS IN BIOINFORMATICS, 2008, 9 (04) :299-306

[5]

Sambrook J, 2001, MOL CLONING LAB MANU, DOI DOI 10.1086/394015

[6]

Tamura K, 2013, MOL BIOL EVOL, V30, P2725, DOI [10.1093/molbev/mst197, 10.1093/molbev/msr121]

[7] Mitochondrial genome of the Shorthead catfish (Pelteobagrus eupogon) [J].

Wang, Xiao-Yang ;

Cao, Lei ;

Liang, Hong-Wei ;

Li, Zhong ;

Zou, Gui-Wei .

MITOCHONDRIAL DNA, 2013, 24 (01) :1-2

[8] The complete mitochondrial genome of Glyptothorax fukiensis fukiensis (Teleostei, Siluriformes: Sisoridae) [J].

Zhou, Chuanjiang ;

Wang, Dengqiang ;

Yu, Meiling ;

He, Shunping .

MITOCHONDRIAL DNA, 2012, 23 (06) :414-416

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