Evaluating short-term forecasting of COVID-19 cases among different epidemiological models under a Bayesian framework

被引:8
作者
Li, Qiwei [1 ]
Bedi, Tejasv [1 ]
Lehmann, Christoph U. [2 ,3 ,4 ]
Xiao, Guanghua [3 ,4 ]
Xie, Yang [3 ,4 ]
机构
[1] Univ Texas Dallas, Dept Math Sci, 800 W Campbell Rd, Richardson, TX 75080 USA
[2] Univ Texas Southwestern Med Ctr Dallas, Dept Pediat, Dallas, TX 75390 USA
[3] Univ Texas Southwestern Med Ctr Dallas, Lyda Hill Dept Bioinformat, Dallas, TX 75390 USA
[4] Univ Texas Southwestern Med Ctr Dallas, Dept Populat & Data Sci, Dallas, TX 75390 USA
基金
美国国家卫生研究院;
关键词
COVID-19; SARS-CoV-2; stochastic growth model; stochastic SIR model; time-series cross-validation; REPRODUCTION NUMBER; GROWTH CURVE; CHINA; PARAMETERS; DENGUE;
D O I
10.1093/gigascience/giab009
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Forecasting of COVID-19 cases daily and weekly has been one of the challenges posed to governments and the health sector globally. To facilitate informed public health decisions, the concerned parties rely on short-term daily projections generated via predictive modeling. We calibrate stochastic variants of growth models and the standard susceptible-infectious-removed model into 1 Bayesian framework to evaluate and compare their short-term forecasts. Results: We implement rolling-origin cross-validation to compare the short-term forecasting performance of the stochastic epidemiological models and an autoregressive moving average model across 20 countries that had the most confirmed COVID-19 cases as of August 22, 2020. Conclusion: None of the models proved to be a gold standard across all regions, while all outperformed the autoregressive moving average model in terms of the accuracy of forecast and interpretability.
引用
收藏
页数:11
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