Sequence and annotation of the 314-kb MT325 and the 321-kb FR483 viruses that infect Chlorella Pbi

被引:45
作者
Fitzgerald, Lisa A.
Graves, Michael V.
Li, Xiao
Feldblyum, Tamara
Hartigan, James
Van Etten, James L. [1 ]
机构
[1] Univ Nebraska, Dept Plant Pathol, Lincoln, NE 68383 USA
[2] Univ Nebraska, Dept Chem, Lincoln, NE 68588 USA
[3] Univ Massachusetts, Dept Biol Sci, Lowell, MA 01854 USA
[4] Inst Genome Res, Rockville, MD 20850 USA
[5] Agencourt Biosci Corp, Beverly, MA 01915 USA
[6] Univ Nebraska, Nebraska Ctr Virol, Lincoln, NE 68588 USA
关键词
chlorella viruses; phycodnaviridae; virus MT325; virus FR483; genome sequence;
D O I
10.1016/j.virol.2006.08.034
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Viruses MT325 and FR483, members of the family Phycodnaviridae, genus Chlorovirus, infect the fresh water, unicellular, eukaryotic, chlorella-like green alga, Chlorella Pbi. The 314,335-bp genorne of MT325 and the 321,240-bp genome of FR483 are the first viruses that infect Chlorella Pbi to have their genomes sequenced and annotated. Furthermore, these genomes are the two smallest chlorella virus genomes sequenced to date, MT325 has 331 putative protein-encoding and 10 tRNA-encoding genes and FR483 has 335 putative protein-encoding and 9 tRNA-encoding genes. The protein-encoding genes are almost evenly distributed on both strands, and intergenic space is minimal. Approximately 40% of the viral gene products resemble entries in public databases, including some that are the first of their kind to be detected in a virus. For example, these unique gene products include an aquaglyceroporin in MT325, a potassium ion transporter protein and an alkyl sulfatase in FR483, and a dTDP-glucose pyrophosphorylase in both viruses. Comparison of MT325 and FR483 protein-encoding genes with the prototype chlorella virus PBCV-I indicates that approximately 82% of the genes are present in all three viruses. (c) 2006 Elsevier Inc. All rights reserved.
引用
收藏
页码:459 / 471
页数:13
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