Prediction of novel archaeal enzymes from sequence-derived features

被引：34

作者：

Jensen, LJ ^{[1
]}

Skovgaard, M ^{[1
]}

Brunak, S ^{[1
]}

机构：

[1] Tech Univ Denmark, Ctr Biol Sequence Anal, BioCentrum, DK-2800 Lyngby, Denmark

来源：

PROTEIN SCIENCE | 2002年 / 11卷 / 12期

关键词：

function prediction; enzyme classification; Archaea; glycosylation; secondary structure;

D O I：

10.1110/ps.0225102

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The completely sequenced archaeal genomes potentially encode, among their many functionally uncharacterized genes, novel enzymes of biotechnological interest. We have developed a prediction method for detection and classification of enzymes from sequence alone (available at http://www.cbs.dtu.dk/services/ArchaeaFun/). The method does not make use of sequence similarity; rather, it relies on predicted protein features like cotranslational and posttranslational modifications, secondary structure, and simple physical/chemical properties.

引用

页码：2894 / 2898

页数：5

共 50 条

[41] Characterization of N-glycosylation and amino acid sequence features of immunoglobulins from swine [J].

Lopez, Paul G. ;

Girard, Lauren ;

Buist, Marjorie ;

de Oliveira, Andrey Giovanni Gomes ;

Bodnar, Edward ;

Salama, Apolline ;

Soulillou, Jean-Paul ;

Perreault, Helene .

GLYCOCONJUGATE JOURNAL, 2016, 33 (01) :79-91

[42] Characterization of N-glycosylation and amino acid sequence features of immunoglobulins from swine [J].

Paul G. Lopez ;

Lauren Girard ;

Marjorie Buist ;

Andrey Giovanni Gomes de Oliveira ;

Edward Bodnar ;

Apolline Salama ;

Jean-Paul Soulillou ;

Hélène Perreault .

Glycoconjugate Journal, 2016, 33 :79-91

[43] Conformational Analysis of Peptides and Glycopeptides Derived from the Consensus Sequence for β-O-Glucosylation [J].

Somovilla, Vctor J. ;

Martinez-Saez, Nuria ;

Fernandez-Tejada, Alberto ;

de la Torre, Beatriz G. ;

Andreu, David ;

Jimenez-Barbero, Jesus ;

Asensio, Juan L. ;

Avenoza, Alberto ;

Busto, Jesus H. ;

Corzana, Francisco ;

Peregrina, Jesus M. .

CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2014, 14 (23) :2712-2721

[44] StackCBPred: A stacking based prediction of protein-carbohydrate binding sites from sequence [J].

Gattani, Suraj ;

Mishra, Avdesh ;

Hoque, Md Tamjidul .

CARBOHYDRATE RESEARCH, 2019, 486

[45] DomSVR: domain boundary prediction with support vector regression from sequence information alone [J].

Chen, Peng ;

Liu, Chunmei ;

Burge, Legand ;

Li, Jinyan ;

Mohammad, Mahmood ;

Southerland, William ;

Gloster, Clay ;

Wang, Bing .

AMINO ACIDS, 2010, 39 (03) :713-726

[46] Prediction of Protein Folding Rates from Primary Sequences Using Hybrid Sequence Representation [J].

Jiang, Yingfu ;

Iglinski, Paul ;

Kurgan, Lukasz .

JOURNAL OF COMPUTATIONAL CHEMISTRY, 2009, 30 (05) :772-783

[47] Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence [J].

Blom, N ;

Sicheritz-Pontén, T ;

Gupta, R ;

Gammeltoft, S ;

Brunak, S .

PROTEOMICS, 2004, 4 (06) :1633-1649

[48] Prediction of human protein function from post-translational modifications and localization features [J].

Jensen, LJ ;

Gupta, R ;

Blom, N ;

Devos, D ;

Tamames, J ;

Kesmir, C ;

Nielsen, H ;

Stærfeldt, HH ;

Rapacki, K ;

Workman, C ;

Andersen, CAF ;

Knudsen, S ;

Krogh, A ;

Valencia, A ;

Brunak, S .

JOURNAL OF MOLECULAR BIOLOGY, 2002, 319 (05) :1257-1265

[49] Identification of a novel advanced glycation end product derived from lactaldehyde [J].

Fujimoto, Shiori ;

Murakami, Yoto ;

Miyake, Haruna ;

Hayase, Fumitaka ;

Watanabe, Hirohito .

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 2019, 83 (06) :1136-1145

[50] Antimicrobial activity and secondary structure of a novel peptide derived from ovalbumin [J].

Tan, Ao ;

Suzuki, Rio ;

Yokoyama, Chikako ;

Yano, Shigekazu ;

Konno, Hiroyuki .

JOURNAL OF PEPTIDE SCIENCE, 2020, 26 (10)

← 1 2 3 4 5 →