Joining forces in the quest for orthologs

被引：50

作者：

Gabaldon, Toni ^{[1
]}

Dessimoz, Christophe ^{[2
,3
]}

Huxley-Jones, Julie ^{[4
]}

Vilella, Albert J. ^{[5
]}

Sonnhammer, Erik L. L. ^{[6
]}

Lewis, Suzanna ^{[7
]}

机构：

[1] Ctr Gene Regulac CRG, Bioinformat & Genom Programme, Barcelona, Spain

[2] ETH, CH-8092 Zurich, Switzerland

[3] Swiss Inst Bioinformat, CH-8092 Zurich, Switzerland

[4] GlaxoSmithKline Inc, Computat Biol, Stevenage SG1 2NY, Herts, England

[5] Wellcome Trust Genome Campus, European Bioinformat Inst, Cambridge CB10 1SD, England

[6] Stockholm Univ, AlbaNova Univ Ctr, Stockholm Bioinformat Ctr, S-10691 Stockholm, Sweden

[7] Lawrence Berkeley Natl Lab, Berkeley, CA 94618 USA

来源：

GENOME BIOLOGY | 2009年 / 10卷 / 09期

关键词：

AUTOMATED CONSTRUCTION; ANNOTATION; RESOURCE;

D O I：

10.1186/gb-2009-10-9-403

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Better orthology-prediction resources would be beneficial for the whole biological community. A recent meeting discussed how to coordinate and leverage current efforts.

引用

页数：3

共 13 条

[1]

Alexeyenko Andrey, 2006, Drug Discov Today Technol, V3, P137, DOI 10.1016/j.ddtec.2006.06.002

[2] Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods [J].

Altenhoff, Adrian M. ;

Dessimoz, Christophe .

PLOS COMPUTATIONAL BIOLOGY, 2009, 5 (01)

[3] The HGNC Database in 2008: a resource for the human genome [J].

Bruford, Elspeth A. ;

Lush, Michael J. ;

Wright, Mathew W. ;

Sneddon, Tam P. ;

Povey, Sue ;

Birney, Ewan .

NUCLEIC ACIDS RESEARCH, 2008, 36 :D445-D448

[4] Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes [J].

Chen, Feng ;

Mackey, Aaron J. ;

Vermunt, Jeroen K. ;

Roos, David S. .

PLOS ONE, 2007, 2 (04)

[5] Berkeley PHOG: PhyloFacts orthology group prediction web server [J].

Datta, Ruchira S. ;

Meacham, Christopher ;

Samad, Bushra ;

Neyer, Christoph ;

Sjolander, Kimmen .

NUCLEIC ACIDS RESEARCH, 2009, 37 :W84-W89

[6] DISTINGUISHING HOMOLOGOUS FROM ANALOGOUS PROTEINS [J].

FITCH, WM .

SYSTEMATIC ZOOLOGY, 1970, 19 (02) :99-&

[7] Large-scale assignment of orthology: back to phylogenetics? [J].

Gabaldon, Toni .

GENOME BIOLOGY, 2008, 9 (10) :235

[8] Benchmarking ortholog identification methods using functional genomics data [J].

Hulsen, Tim ;

Huynen, Martijn A. ;

de Vlieg, Jacob ;

Groenen, Peter M. A. .

GENOME BIOLOGY, 2006, 7 (04)

[9] eggNOG: automated construction and annotation of orthologous groups of genes [J].

Jensen, Lars Juhl ;

Julien, Philippe ;

Kuhn, Michael ;

von Mering, Christian ;

Muller, Jean ;

Doerks, Tobias ;

Bork, Peer .

NUCLEIC ACIDS RESEARCH, 2008, 36 :D250-D254

[10] ProGMap: an integrated annotation resource for protein orthology [J].

Kuzniar, Arnold ;

Lin, Ke ;

He, Ying ;

Nijveen, Harm ;

Pongor, Sandor ;

Leunissen, Jack A. M. .

NUCLEIC ACIDS RESEARCH, 2009, 37 :W428-W434

← 1 2 →