Using NextRAD sequencing to infer movement of herbivores among host plants

被引:20
作者
Fu, Zhen [1 ]
Epstein, Brendan [2 ,7 ]
Kelley, Joanna L. [2 ]
Zheng, Qi [3 ]
Bergland, Alan O. [4 ,8 ]
Carrillo, Carmen I. Castillo [1 ,9 ]
Jensen, Andrew S. [5 ]
Dahan, Jennifer [6 ]
Karasev, Alexander V. [6 ]
Snyder, William E. [1 ]
机构
[1] Washington State Univ, Dept Entomol, Pullman, WA 99164 USA
[2] Washington State Univ, Sch Biol Sci, Pullman, WA 99164 USA
[3] Univ Louisville, Dept Bioinformat & Biostat, Louisville, KY 40292 USA
[4] Stanford Univ, Dept Biol, Stanford, CA 94305 USA
[5] Northwest Potato Res Consortium, Lakeview, OR USA
[6] Univ Idaho, Dept Plant Soil & Entomol Sci, Moscow, ID 83843 USA
[7] Univ Minnesota, Coll Biol Sci, St Paul, MN 55108 USA
[8] Univ Virginia, Dept Biol, Charlottesville, VA USA
[9] Inst Nacl Invest Agr INIAP, Estn Expt Santa Catalina, Dept Protecc Vegetal, Panamericana Sur Km 1, Quito, Ecuador
来源
PLOS ONE | 2017年 / 12卷 / 05期
基金
美国食品与农业研究所;
关键词
INSECT VECTORS; POPULATIONS; MARKERS; LOCI; DIVERSITY; PATTERNS; DISEASE; ADAPTATION; MIGRATION; SELECTION;
D O I
10.1371/journal.pone.0177742
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Herbivores often move among spatially interspersed host plants, tracking high-quality resources through space and time. This dispersal is of particular interest for vectors of plant pathogens. Existing molecular tools to track such movement have yielded important insights, but often provide insufficient genetic resolution to infer spread at finer spatiotemporal scales. Here, we explore the use of Nextera-tagmented reductively-amplified DNA (Nex-tRAD) sequencing to infer movement of a highly-mobile winged insect, the potato psyllid (Bactericera cockerelli), among host plants. The psyllid vectors the pathogen that causes zebra chip disease in potato (Solanum tuberosum), but understanding and managing the spread of this pathogen is limited by uncertainty about the insect's host plant(s) outside of the growing season. We identified 1,978 polymorphic loci among psyllids separated spatiotemporally on potato or in patches of bittersweet nightshade (S. dulcumara), a weedy plant proposed to be the source of potato-colonizing psyllids. A subset of the psyllids on potato exhibited genetic similarity to insects on nightshade, consistent with regular movement between these two host plants. However, a second subset of potato-collected psyllids was genetically distinct from those collected on bittersweet nightshade; this suggests that a currently unrecognized source, i.e., other nightshade patches or a third host-plant species, could be contributing to psyllid populations in potato. Oftentimes, dispersal of vectors of pathogens must be tracked at a fine scale in order to understand, predict, and manage disease spread. We demonstrate that emerging sequencing technologies that detect genome-wide SNPs of a vector can be used to infer such localized movement.
引用
收藏
页数:19
相关论文
共 76 条
  • [1] Fast model-based estimation of ancestry in unrelated individuals
    Alexander, David H.
    Novembre, John
    Lange, Kenneth
    [J]. GENOME RESEARCH, 2009, 19 (09) : 1655 - 1664
  • [2] BASIC LOCAL ALIGNMENT SEARCH TOOL
    ALTSCHUL, SF
    GISH, W
    MILLER, W
    MYERS, EW
    LIPMAN, DJ
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) : 403 - 410
  • [3] LOSITAN:: A workbench to detect molecular adaptation based on a Fst-outlier method
    Antao, Tiago
    Lopes, Ana
    Lopes, Ricardo J.
    Beja-Pereira, Albano
    Luikart, Gordon
    [J]. BMC BIOINFORMATICS, 2008, 9 (1)
  • [4] Sun skink landscape genomics: assessing the roles of micro-evolutionary processes in shaping genetic and phenotypic diversity across a heterogeneous and fragmented landscape
    Barley, Anthony J.
    Monnahan, Patrick J.
    Thomson, Robert C.
    Grismer, L. Lee
    Brown, Rafe M.
    [J]. MOLECULAR ECOLOGY, 2015, 24 (08) : 1696 - 1712
  • [5] Molecular marker systems in insects: current trends and future avenues
    Behura, Susanta K.
    [J]. MOLECULAR ECOLOGY, 2006, 15 (11) : 3087 - 3113
  • [6] FOOD PLANT-SELECTION BY A GENERALIST HERBIVORE - THE MOOSE
    BELOVSKY, GE
    [J]. ECOLOGY, 1981, 62 (04) : 1020 - 1030
  • [7] A Migratory Northern Ungulate in the Pursuit of Spring: Jumping or Surfing the Green Wave?
    Bischof, Richard
    Loe, Leif Egil
    Meisingset, Erling L.
    Zimmermann, Barbara
    Van Moorter, Bram
    Mysterud, Atle
    [J]. AMERICAN NATURALIST, 2012, 180 (04) : 407 - 424
  • [8] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
  • [9] Climate change effects on physiology and population processes of hosts and vectors that influence the spread of hemipteran-borne plant viruses
    Canto, Tomas
    Aranda, Miguel A.
    Fereres, Alberto
    [J]. GLOBAL CHANGE BIOLOGY, 2009, 15 (08) : 1884 - 1894
  • [10] Potato Leafhopper (Hemiptera: Cicadellidae) Ecology and Integrated Pest Management Focused on Alfalfa
    Chasen, Elissa M.
    Dietrich, Christopher
    Backus, Elaine A.
    Cullen, Eileen M.
    [J]. JOURNAL OF INTEGRATED PEST MANAGEMENT, 2014, 5 (01):