Fragment Library Screening and Lead Characterization Using SPR Biosensors

被引:54
作者
Danielson, U. Helena [1 ,2 ]
机构
[1] Uppsala Univ, Dept Biochem & Organ Chem, SE-75123 Uppsala, Sweden
[2] Beact AB, SE-75122 Uppsala, Sweden
关键词
SPR; biosensor; fragment-based lead discovery; interactions; kinetics; affinity; screening; HIV-1; REVERSE-TRANSCRIPTASE; SURFACE-PLASMON RESONANCE; NONNUCLEOSIDE INHIBITORS; KINETIC CHARACTERIZATION; LIGAND EFFICIENCY; DRUG DISCOVERY; BETA-SECRETASE; HIGH-AFFINITY; TECHNOLOGY; BIACORE;
D O I
10.2174/156802609790102392
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
The transition from high throughput screening of collections of drug-like compounds to screening of fragment libraries via lower throughput methods with high sensitivity has revolutionized early drug discovery. It is highlighting the need for sensitive biophysical techniques for interaction analysis rather than high throughput methods. Biosensors with SPR detection are well suited for this novel scenario. In less than 20 years the technique has been launched, established and become a highly informative method for a variety of applications in drug discovery. It is no longer limited to the detection of proteins or other high molecular weight analytes, but the detection of weakly interacting fragments is now feasible. This paper discusses the theoretical and experimental limitations for such applications and reviews a number of successful studies in the area of fragment-based lead discovery that have recently been published. It can be anticipated that the evolution of this young technique will be significantly influenced by the requirements for efficient fragment-based lead discovery.
引用
收藏
页码:1725 / 1735
页数:11
相关论文
共 38 条
[1]   Fragment-based discovery of hepatitis C virus NS5b RNA polymerase inhibitors [J].
Antonysamy, Stephen S. ;
Aubol, Brandon ;
Blaney, Jeff ;
Browner, Michelle F. ;
Giannetti, Anthony M. ;
Harris, Seth F. ;
Hebert, Normand ;
Hendle, Joerg ;
Hopkins, Stephanie ;
Jefferson, Elizabeth ;
Kissinger, Charles ;
Leveque, Vincent ;
Marciano, David ;
McGee, Ethel ;
Najera, Isabel ;
Nolan, Brian ;
Tomimoto, Masaki ;
Torres, Eduardo ;
Wright, Tobi .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2008, 18 (09) :2990-2995
[2]   Biosensor-based screening and characterization of HIV-1 inhibitor interactions with Sap 1, Sap 2, and Sap 3 from Candida albicans [J].
Backman, D ;
Monod, M ;
Danielson, UH .
JOURNAL OF BIOMOLECULAR SCREENING, 2006, 11 (02) :165-175
[3]  
BLOMBERG N, 2009, J COMPUT AIDED MOL D
[4]   A rule of three for fragment-based lead discovery? [J].
Congreve, M ;
Carr, R ;
Murray, C ;
Jhoti, H .
DRUG DISCOVERY TODAY, 2003, 8 (19) :876-877
[5]   Direct comparison of binding equilibrium, thermodynamic, and rate constants determined by surface- and solution-based biophysical methods [J].
Day, YSN ;
Baird, CL ;
Rich, RL ;
Myszka, DG .
PROTEIN SCIENCE, 2002, 11 (05) :1017-1025
[6]   Application of fragment-based lead generation to the discovery of novel, cyclic amidine β-secretase inhibitors with nanomolar potency, cellular activity, and high ligand efficiency [J].
Edwards, Philip D. ;
Albert, Jeffrey S. ;
Sylvester, Mark ;
Aharony, David ;
Andisik, Donald ;
Callaghan, Owen ;
Campbell, James B. ;
Carr, Robin A. ;
Chessari, Gianni ;
Congreve, Miles ;
Frederickson, Martyn ;
Folmer, Rutger H. A. ;
Geschwindner, Stefan ;
Koether, Gerard ;
Kolmodin, Karin ;
Krumrine, Jennifer ;
Mauger, Russell C. ;
Murray, Christopher W. ;
Olsson, Lise-Lotte ;
Patel, Sahil ;
Spear, Nate ;
Tian, Gaochao .
JOURNAL OF MEDICINAL CHEMISTRY, 2007, 50 (24) :5912-5925
[7]  
ELINDER M, 2009, CHI FRAGM BAS TECHN
[8]   Screening for NNRTIs with Slow Dissociation and High Affinity for a Panel of HIV-1 RT Variants [J].
Elinder, Malin ;
Nordstrom, Helena ;
Geitmann, Matthis ;
Hamalainen, Markku ;
Vrang, Lotta ;
Oberg, Bo ;
Danielson, U. Helena .
JOURNAL OF BIOMOLECULAR SCREENING, 2009, 14 (04) :395-403
[9]   Interaction kinetic characterization of HIV-1 reverse transcriptase non-nucleoside inhibitor resistance [J].
Geitmann, M ;
Unge, T ;
Danielson, UH .
JOURNAL OF MEDICINAL CHEMISTRY, 2006, 49 (08) :2375-2387
[10]   Biosensor-based kinetic characterization of the interaction between HIV-1 reverse transcriptase and non-nucleoside inhibitors [J].
Geitmann, M ;
Unge, T ;
Danielson, UH .
JOURNAL OF MEDICINAL CHEMISTRY, 2006, 49 (08) :2367-2374