Constraints on the Biological Source(s) of the Orphan Branched Tetraether Membrane Lipids

被引:219
作者
Weijers, Johan W. H. [1 ,2 ,3 ]
Panoto, Elda [2 ,3 ]
van Bleijswijk, Judith [2 ,3 ]
Schouten, Stefan [2 ,3 ]
Rijpstra, W. Irene C. [2 ,3 ]
Balk, Melike [4 ]
Stams, Alfons J. M. [4 ]
Damste, Jaap S. Sinninghe [2 ,3 ]
机构
[1] Univ Utrecht, Dept Earth Sci, NL-3584 CD Utrecht, Netherlands
[2] Royal Netherlands Inst Sea Res, Dept Marine Organ Biogeochem, NL-1790 AB Den Burg, Netherlands
[3] Royal Netherlands Inst Sea Res, Dept Biol Oceanog, NL-1790 AB Den Burg, Netherlands
[4] Wageningen Univ, Microbiol Lab, NL-6703 HB Wageningen, Netherlands
关键词
acidobacteria; archaea; lipids; methanogens; peat; tetraether membrane; 16S RIBOSOMAL-RNA; GRADIENT GEL-ELECTROPHORESIS; SOUTHWESTERN UNITED-STATES; SP-NOV; ACID-TOLERANT; PHYLOGENETIC ANALYSIS; METHANOGENIC ARCHAEA; MICROBIAL DIVERSITY; COMMUNITY STRUCTURE; PEAT BOG;
D O I
10.1080/01490450902937293
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
A soil profile from the Saxnas Mosse peat bog, Sweden, has been analysed for glycerol dialkyl glycerol tetraether (GDGT) membrane lipids and 16S rRNA genes in order to constrain the source of the yet 'orphan,' but supposedly bacterial, branched GDGTs. Branched GDGT lipids dominate over archaeal membrane lipids. The Acidobacteria comprise the dominant bacterial group, accounting for the majority of total Bacteria, and are generally more abundant than methanogenic archaea. Analysed acidobacterial strains did not contain branched GDGT lipids. Thus, the source organism must likely be searched for in other acidobacterial phyla or in another abundant group within the remaining bacteria.
引用
收藏
页码:402 / 414
页数:13
相关论文
共 83 条
[1]   Dominant bacteria in soils of Marble Point and Wright Valley, Victoria Land, Antarctica [J].
Aislabie, Jackie. M. ;
Chhour, Kim-Ly ;
Saul, David J. ;
Miyauchi, Shingo ;
Ayton, Julie ;
Paetzold, Ron F. ;
Balks, Megan R. .
SOIL BIOLOGY & BIOCHEMISTRY, 2006, 38 (10) :3041-3056
[2]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[3]   IDENTIFICATION OF INDIVIDUAL PROKARYOTIC CELLS BY USING ENZYME-LABELED, RIBOSOMAL-RNA-TARGETED OLIGONUCLEOTIDE PROBES [J].
AMANN, RI ;
ZARDA, B ;
STAHL, DA ;
SCHLEIFER, KH .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1992, 58 (09) :3007-3011
[4]  
Barns SM, 1999, APPL ENVIRON MICROB, V65, P1731
[5]   Acidobactetia phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum [J].
Barns, Susan M. ;
Cain, Elizabeth C. ;
Sommerville, Leslie ;
Kuske, Cheryl R. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73 (09) :3113-3116
[6]   REVIEW AND ASSESSMENT OF METHANE EMISSIONS FROM WETLANDS [J].
BARTLETT, KB ;
HARRISS, RC .
CHEMOSPHERE, 1993, 26 (1-4) :261-320
[7]   GenBank [J].
Benson, DA ;
Karsch-Mizrachi, I ;
Lipman, DJ ;
Ostell, J ;
Rapp, BA ;
Wheeler, DL .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :15-18
[8]   Molecular phylogeny of archaea from soil [J].
Bintrim, SB ;
Donohue, TJ ;
Handelsman, J ;
Roberts, GP ;
Goodman, RM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (01) :277-282
[9]   Isolation of a novel acidiphilic methanogen from an acidic peat bog [J].
Braeuer, Suzanna L. ;
Cadillo-Quiroz, Hinsby ;
Yashiro, Erika ;
Yavitt, Joseph B. ;
Zinder, Stephen H. .
NATURE, 2006, 442 (7099) :192-194
[10]   Characterization of acid-tolerant H2/CO2-utilizing methanogenic enrichment cultures from an acidic peat bog in New York State [J].
Brauer, Suzanna L. ;
Yashiro, Erika ;
Ueno, Norikiyo G. ;
Yavitt, Joseph B. ;
Zinder, Stephen H. .
FEMS MICROBIOLOGY ECOLOGY, 2006, 57 (02) :206-216