Systematic Mapping of Genetic Interaction Networks

被引:196
作者
Dixon, Scott J. [1 ,2 ]
Costanzo, Michael [1 ]
Baryshnikova, Anastasia [1 ]
Andrews, Brenda [1 ]
Boone, Charles [1 ]
机构
[1] Univ Toronto, Banting & Best Dept Med Res, Terrence Donnelly Ctr Cellular & Biomol Res, Toronto, ON M5S 1A7, Canada
[2] Columbia Univ, Dept Biol Sci, New York, NY 10027 USA
基金
加拿大健康研究院;
关键词
genetic interaction; network; synthetic lethal; Saccharomyces cerevisiae; epistasts; PROTEIN-PROTEIN INTERACTIONS; MODE-OF-ACTION; SYNTHETIC LETHAL; CAENORHABDITIS-ELEGANS; HIGH-THROUGHPUT; FUNCTIONAL-ANALYSIS; DELETERIOUS MUTATIONS; BIOACTIVE COMPOUNDS; SCREENS IDENTIFY; RNAI LIBRARY;
D O I
10.1146/annurev.genet.39.073003.114751
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Genetic interactions influencing a phenotype of interest call be identified systematically using libraries of genetic tools that perturb biological systems in a defined manner. Systematic screens conducted in the yeast Saccharomyces cerevisiae have identified thousands of genetic interactions land provided insight into the global structure of biological networks. Techniques enabling systematic genetic interaction mapping have been extended to other single-celled organisms, the bacteria Escherichia coli and the yeast Schizosaccharomyces pombe, opening the way to comparative investigations of interaction networks. Genetic interaction screens in Caenorhabditis elegans, Drosophila melanogaster and mammalian models are helping to improve our understanding of metazoan-specific signaling pathways. together, our emerging knowledge of the genetic wiring diagrams of eukaryotic and prokaryotic cells is providing a new understanding of the relationship between genotype and phenotype.
引用
收藏
页码:601 / 625
页数:25
相关论文
共 142 条
  • [1] Genetic Mapping in Human Disease
    Altshuler, David
    Daly, Mark J.
    Lander, Eric S.
    [J]. SCIENCE, 2008, 322 (5903) : 881 - 888
  • [2] Genetic approaches to the study of protein-protein interactions
    Appling, DR
    [J]. METHODS, 1999, 19 (02) : 338 - 349
  • [3] AVERY L, 1992, TRENDS GENET, V8, P312, DOI 10.1016/0168-9525(92)90263-4
  • [4] Gaining confidence in high-throughput protein interaction networks
    Bader, JS
    Chaudhuri, A
    Rothberg, JM
    Chant, J
    [J]. NATURE BIOTECHNOLOGY, 2004, 22 (01) : 78 - 85
  • [5] Phosphorylation networks regulating JNK activity in diverse genetic backgrounds
    Bakal, Chris
    Linding, Rune
    Llense, Flora
    Heffern, Elleard
    Martin-Blanco, Enrique
    Pawson, Tony
    Perrimon, Norbert
    [J]. SCIENCE, 2008, 322 (5900) : 453 - 456
  • [6] Functional maps of protein complexes from quantitative genetic interaction data
    Bandyopadhyay, Sourav
    Kelley, Ryan
    Krogan, Nevan J.
    Ideker, Trey
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2008, 4 (04)
  • [7] Bateson W., 1905, Reports to the Evolution Committee of the Royal Society
  • [8] Synthetic lethal analysis of Caenorhabditis elegans posterior embryonic patterning genes identifies conserved genetic interactions -: art. no. R45
    Baugh, LR
    Wen, JC
    Hill, AA
    Slonim, DK
    Brown, EL
    Hunter, CP
    [J]. GENOME BIOLOGY, 2005, 6 (05)
  • [9] Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae
    Ben-Aroya, Shay
    Coombes, Candice
    Kwok, Teresa
    O'Donnell, Kathryn A.
    Boeke, Jef D.
    Hieter, Philip
    [J]. MOLECULAR CELL, 2008, 30 (02) : 248 - 258
  • [10] A proteomic screen reveals sCFGrr1 targets that regulate the glycolytic-gluconeogenic switch
    Benanti, Jennifer A.
    Cheung, Stephanie K.
    Brady, Mariska C.
    Toczyski, David P.
    [J]. NATURE CELL BIOLOGY, 2007, 9 (10) : 1184 - 1191