To sequence or not to sequence the whole-soil metagenome?

被引:25
作者
Baveye, Philippe C. [1 ]
机构
[1] Abertay Univ, SIMBIOS Ctr, Dundee DD1 1HG, Scotland
关键词
MICROBIAL COMMUNITIES; ECOSYSTEMS;
D O I
10.1038/nrmicro2119-c2
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
引用
收藏
页码:756 / 756
页数:1
相关论文
共 13 条
[1]   Metagenomics as a new technological tool to gain scientific knowledge [J].
Guazzaroni, Maria-Eugenia ;
Beloqui, Ana ;
Golyshin, Peter N. ;
Ferrer, Manuel .
WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 2009, 25 (06) :945-954
[2]   Further biogeochemical characterization of a trichloroethene-contaminated fractured dolomite aquifer: Electron source and microbial communities involved in reductive dechlorination [J].
Hohnstock-Ashe, AM ;
Plummer, SM ;
Yager, RM ;
Baveye, P ;
Madsen, EL .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2001, 35 (22) :4449-4456
[3]   Electron microprobe and synchrotron X-ray fluorescence mapping of the heterogeneous distribution of copper in high-copper vineyard soils [J].
Jacobson, Astrid R. ;
Dousset, Sylvie ;
Andreux, Francis ;
Baveye, Philippe C. .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2007, 41 (18) :6343-6349
[4]   High-resolution metagenomics targets specific functional types in complex microbial communities [J].
Kalyuzhnaya, Marina G. ;
Lapidus, Alla ;
Ivanova, Natalia ;
Copeland, Alex C. ;
McHardy, Alice C. ;
Szeto, Ernest ;
Salamov, Asaf ;
Grigoriev, Igor V. ;
Suciu, Dominic ;
Levine, Samuel R. ;
Markowitz, Victor M. ;
Rigoutsos, Isidore ;
Tringe, Susannah G. ;
Bruce, David C. ;
Richardson, Paul M. ;
Lidstrom, Mary E. ;
Chistoserdova, Ludmila .
NATURE BIOTECHNOLOGY, 2008, 26 (09) :1029-1034
[5]   Nanoscale biogeocomplexity of the organomineral assemblage in soil: Application of STXM microscopy and C 1s-NEXAFS spectroscopy [J].
Kinyangi, James ;
Solomon, Dawit ;
Liang, Biqing ;
Lerotic, Mirna ;
Wirick, Sue ;
Lehmann, Johannes .
SOIL SCIENCE SOCIETY OF AMERICA JOURNAL, 2006, 70 (05) :1708-1718
[6]   Modelling the impact of pore space distribution on carbon turnover [J].
Kuka, K. ;
Franko, U. ;
Ruehlmann, J. .
ECOLOGICAL MODELLING, 2007, 208 (2-4) :295-306
[7]   Applicability of averaged concentrations in determining geochemical reaction rates in heterogeneous porous media [J].
Li, Li ;
Peters, Catherine A. ;
Celia, Micael A. .
AMERICAN JOURNAL OF SCIENCE, 2007, 307 (10) :1146-1166
[8]   Effect of microbial activity on trace element release from sewage sludge [J].
Qureshi, S ;
Richards, BK ;
Hay, AG ;
Tsai, CC ;
McBride, MB ;
Baveye, P ;
Steenhuis, TS .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2003, 37 (15) :3361-3366
[9]   Systems microbiology - Timeline - Molecular eco-systems biology: towards an understanding of community function [J].
Raes, Jeroen ;
Bork, Peer .
NATURE REVIEWS MICROBIOLOGY, 2008, 6 (09) :693-699
[10]   Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms [J].
Rondon, MR ;
August, PR ;
Bettermann, AD ;
Brady, SF ;
Grossman, TH ;
Liles, MR ;
Loiacono, KA ;
Lynch, BA ;
MacNeil, IA ;
Minor, C ;
Tiong, CL ;
Gilman, M ;
Osburne, MS ;
Clardy, J ;
Handelsman, J ;
Goodman, RM .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2000, 66 (06) :2541-2547