Phytophthora genomics:: The plant destroyers' genome decoded

被引:55
作者
Govers, Francine
Gijzen, Mark
机构
[1] Wageningen Univ, Phytopathol Lab, Plant Sci Grp, NL-6709 PD Wageningen, Netherlands
[2] Agr & Agri Food Canada, London, ON N5V 4T3, Canada
关键词
alveolate; chromalveolate; effector; evolution; Heterokont; motif; nomenclature; oomycetes; Phytophthora infestans; RxLR-dEER pathogen;
D O I
10.1094/MPMI-19-1295
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The year 2004 was an exciting one for the Phytophthora research community. The United States Department of Energy Joint Genome Institute (JGI) completed the draft genome sequence of two Phytophthora species, Phytophthora sojae and Phytophthora ramorum. In August of that year over 50 people gathered at JGI in Walnut Creek, California, for an annotation jamboree and searched for the secrets and surprises that the two genomes have in petto. This culminated in a paper in Science in September of this year describing the highlights of the sequencing project and emphasizing the power of having the genome sequences of two closely related organisms. This MPMI Focus issue on Phytophthora genomics contains a number of more specialized manuscripts centered on gene annotation and genome organization, and complemented with manuscripts that rely on genomics resources.
引用
收藏
页码:1295 / 1301
页数:7
相关论文
共 64 条
[51]   EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora [J].
Torto, TA ;
Li, SA ;
Styer, A ;
Huitema, E ;
Testa, A ;
Gow, NAR ;
van West, P ;
Kamoun, S .
GENOME RESEARCH, 2003, 13 (07) :1675-1685
[52]   Expressed sequence tags from the oomycete fish pathogen Saprolegnia parasitica reveal putative virulence factors -: art. no. 46 [J].
Torto-Alalibo, T ;
Tian, MY ;
Gajendran, K ;
Waugh, ME ;
van West, P ;
Kamoun, S .
BMC MICROBIOLOGY, 2005, 5 (1)
[53]  
TORTOALALIBO TA, UNPUB PHYTOPHTHORA S
[54]   The repertoire of transfer RNA genes is tuned to codon usage bias in the genornes of Phytophthora sojae and Phytophthora ramorum [J].
Tripathy, Sucheta ;
Tyler, Brett M. .
MOLECULAR PLANT-MICROBE INTERACTIONS, 2006, 19 (12) :1322-1328
[55]   VMD: a community annotation database for oomycetes and microbial genomes [J].
Tripathy, Sucheta ;
Pandey, Varun N. ;
Fang, Bing ;
Salas, Fidel ;
Tyler, Brett M. .
NUCLEIC ACIDS RESEARCH, 2006, 34 :D379-D381
[56]   Genetics and genomics of the oomycete host interface [J].
Tyler, BM .
TRENDS IN GENETICS, 2001, 17 (11) :611-614
[57]   Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis [J].
Tyler, Brett M. ;
Tripathy, Sucheta ;
Zhang, Xuemin ;
Dehal, Paramvir ;
Jiang, Rays H. Y. ;
Aerts, Andrea ;
Arredondo, Felipe D. ;
Baxter, Laura ;
Bensasson, Douda ;
Beynon, Jim L. ;
Chapman, Jarrod ;
Damasceno, Cynthia M. B. ;
Dorrance, Anne E. ;
Dou, Daolong ;
Dickerman, Allan W. ;
Dubchak, Inna L. ;
Garbelotto, Matteo ;
Gijzen, Mark ;
Gordon, Stuart G. ;
Govers, Francine ;
Grunwald, Niklaus J. ;
Huang, Wayne ;
Ivors, Kelly L. ;
Jones, Richard W. ;
Kamoun, Sophien ;
Krampis, Konstantinos ;
Lamour, Kurt H. ;
Lee, Mi-Kyung ;
McDonald, W. Hayes ;
Medina, Monica ;
Meijer, Harold J. G. ;
Nordberg, Eric K. ;
Maclean, Donald J. ;
Ospina-Giraldo, Manuel D. ;
Morris, Paul F. ;
Phuntumart, Vipaporn ;
Putnam, Nicholas H. ;
Rash, Sam ;
Rose, Jocelyn K. C. ;
Sakihama, Yasuko ;
Salamov, Asaf A. ;
Savidor, Alon ;
Scheuring, Chantel F. ;
Smith, Brian M. ;
Sobral, Bruno W. S. ;
Terry, Astrid ;
Torto-Alalibo, Trudy A. ;
Win, Joe ;
Xu, Zhanyou ;
Zhang, Hongbin .
SCIENCE, 2006, 313 (5791) :1261-1266
[58]   Internuclear gene silencing in Phytophthora infestans [J].
van West, P ;
Kamoun, S ;
van 't Klooster, JW ;
Govers, F .
MOLECULAR CELL, 1999, 3 (03) :339-348
[59]  
Van West Pieter, 2006, Mycologist, V20, P99, DOI 10.1016/j.mycol.2006.06.004
[60]  
Vijn I, 2003, MOL PLANT PATHOL, V4, P459, DOI [10.1046/j.1364-3703.2003.00191.x, 10.1046/J.1364-3703.2003.00191.X]