Capillary zone electrophoresis for bottom-up analysis of complex proteomes

被引:38
作者
Sun, Liangliang [1 ]
Zhu, Guijie [1 ]
Yan, Xiaojing [1 ]
Zhang, Zhenbin [1 ]
Wojcik, Roza [1 ]
Champion, Matthew M. [1 ]
Dovichi, Norman J. [1 ]
机构
[1] Univ Notre Dame, Dept Chem & Biochem, Notre Dame, IN 46557 USA
基金
美国国家卫生研究院;
关键词
Bottom-up proteomics; Capillary electrophoresis; Cell biology; Electrokinetically pumped nanospray; Technology; TANDEM MASS-SPECTROMETRY; ELECTROSPRAY-IONIZATION INTERFACE; FLOW NANOSPRAY INTERFACE; DYNAMIC PH JUNCTION; 264.7 CELL LYSATE; PEPTIDE IDENTIFICATIONS; QUANTITATIVE PROTEOMICS; SEPARATION TECHNIQUES; SENSITIVITY; MIXTURES;
D O I
10.1002/pmic.201500339
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Capillary zone electrophoresis (CZE) is emerging as a useful tool in proteomic analysis. Interest arises from dramatic improvements in performance that result from improvements in the background electrolyte used for the separation, the incorporation of advanced sample injection methods, the development of robust and sensitive electrospray interfaces, and the coupling with Orbitrap mass spectrometers with high resolution and sensitivity. The combination of these technologies produces performance that is rapidly approaching the performance of UPLC-based methods for microgram samples and exceeds the performance of UPLC-based methods for mid-to low nanogram samples. These systems now produce over 10 000 peptide IDs in a single 100-min analysis of the HeLa proteome.
引用
收藏
页码:188 / 196
页数:9
相关论文
共 41 条
[1]   COUPLING CAPILLARY ZONE ELECTROPHORESIS AND CONTINUOUS-FLOW FAST ATOM BOMBARDMENT MASS-SPECTROMETRY FOR THE ANALYSIS OF PEPTIDE MIXTURES [J].
CAPRIOLI, RM ;
MOORE, WT ;
MARTIN, M ;
DAGUE, BB ;
WILSON, K ;
MORING, S .
JOURNAL OF CHROMATOGRAPHY, 1989, 480 :247-257
[2]   INTERACTION OF CAPILLARY ZONE ELECTROPHORESIS WITH A SHEATH FLOW CUVETTE DETECTOR [J].
CHENG, YF ;
WU, SL ;
CHEN, DY ;
DOVICHI, NJ .
ANALYTICAL CHEMISTRY, 1990, 62 (05) :496-503
[3]   Quantitative Proteomics Using Ultra low Flow Capillary Electrophoresis-Mass Spectrometry [J].
Faserl, Klaus ;
Kremser, Leopold ;
Mueller, Martin ;
Teis, David ;
Lindner, Herbert H. .
ANALYTICAL CHEMISTRY, 2015, 87 (09) :4633-4640
[4]   Optimization and Evaluation of a Sheathless Capillary Electrophoresis-Electrospray Ionization Mass Spectrometry Platform for Peptide Analysis: Comparison to Liquid Chromatography-Electrospray Ionization Mass Spectrometry [J].
Faserl, Klaus ;
Sarg, Bettina ;
Kremser, Leopold ;
Lindner, Herbert .
ANALYTICAL CHEMISTRY, 2011, 83 (19) :7297-7305
[5]   Data-dependent modulation of solid phase extraction capillary electrophoresis for the analysis of complex peptide and phosphopeptide mixtures by tandem mass spectrometry: Application to endothelial nitric oxide synthase [J].
Figeys, D ;
Corthals, GL ;
Gallis, B ;
Goodlett, DR ;
Ducret, A ;
Corson, MA ;
Aebersold, R .
ANALYTICAL CHEMISTRY, 1999, 71 (13) :2279-2287
[6]   Analysis of complex protein mixtures with improved sequence coverage using (CE-MS/MS)n [J].
Garza, Selynda ;
Moini, Mehdi .
ANALYTICAL CHEMISTRY, 2006, 78 (20) :7309-7316
[7]   The urinary proteome as correlate and predictor of renal function in a population study [J].
Gu, Yu-Mei ;
Thijs, Lutgarde ;
Liu, Yan-Ping ;
Zhang, Zhenyu ;
Jacobs, Lotte ;
Koeck, Thomas ;
Zuerbig, Petra ;
Lichtinghagen, Ralf ;
Brand, Korbinian ;
Kuznetsova, Tatiana ;
Olivi, Laura ;
Verhamme, Peter ;
Delles, Christian ;
Mischak, Harald ;
Staessen, Jan A. .
NEPHROLOGY DIALYSIS TRANSPLANTATION, 2014, 29 (12) :2260-2268
[8]   CE-ESI-MS for bottom-up proteomics: Advances in separation, interfacing and applications [J].
Heemskerk, Anthonius A. M. ;
Deelder, Andre M. ;
Mayboroda, Oleg A. .
MASS SPECTROMETRY REVIEWS, 2016, 35 (02) :259-271
[9]   CAPILLARY ZONE ELECTROPHORESIS [J].
JORGENSON, JW ;
LUKACS, KD .
SCIENCE, 1983, 222 (4621) :266-272
[10]   Recent advances in the combination of capillary electrophoresis with mass spectrometry: From element to single-cell analysis [J].
Kleparnik, Karel .
ELECTROPHORESIS, 2013, 34 (01) :70-85