Multicenter Evaluation of the Cepheid Xpert Xpress SARS-CoV-2/Flu/RSV Test

被引:65
作者
Mostafa, Heba H. [1 ]
Carroll, Karen C. [1 ]
Hicken, Rachel [1 ]
Berry, Gregory J. [2 ]
Manji, Ryhana [2 ]
Smith, Elizabeth [2 ]
Rakeman, Jennifer L. [3 ]
Fowler, Randal C. [3 ]
Leelawong, Mindy [3 ]
Butler-Wu, Susan M. [4 ]
Quintero, David [4 ]
Umali-Wilcox, Minette [4 ]
Kwiatkowski, Robert W. [5 ]
Persing, David H. [5 ]
Weir, Fred [5 ]
Loeffelholz, Michael J. [5 ]
机构
[1] Johns Hopkins Univ, Sch Med, Baltimore, MD USA
[2] Zucker SOM Hofstra Northwell, Northwell Hlth Labs, East Garden City, NY USA
[3] NYC Publ Hlth Lab, Dept Hlth & Mental Hyg, New York, NY USA
[4] Keck Sch Med USC, Dept Pathol, Los Angeles, CA USA
[5] Cepheid, Sunnyvale, CA 94089 USA
关键词
Cepheid; SARS-CoV-2; influenza; flu; RSV; 4-plex; INFLUENZA-VIRUS;
D O I
10.1128/JCM.02955-20
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
With the approach of respiratory virus season in the Northern Hemisphere, clinical microbiology and public health laboratories will need rapid diagnostic assays to distinguish severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) from influenza virus and respiratory syncytial virus (RSV) infections for diagnosis and surveillance. In this study, the clinical performance of the Xpert Xpress SARS-CoV-2/Flu/RSV test (Cepheid, Sunnyvale, CA, USA) for nasopharyngeal swab specimens was evaluated in four centers: Johns Hopkins Medical Microbiology Laboratory, Northwell Health Laboratories, NYC Public Health Laboratory, and Los Angeles County/University of Southern California (LAC1USC) Medical Center. A total of 319 nasopharyngeal swab specimens, positive for SARS- CoV-2 (n = 75), influenza A virus (n = 65), influenza B virus (n = 50), or RSV (n = 38) or negative (n = 91) by the standard-of-care nucleic acid amplification tests at each site, were tested using the Cepheid panel test. The overall positive percent agreement for the SARS-CoV-2 target was 98.7% (n = 74/75), and the negative agreement was 100% (n = 91), with all other analytes showing 100% total agreement (n = 153). Standard-of-care tests to which the Cepheid panel was compared included the Cepheid Xpert Xpress SARS-CoV-2, Cepheid Xpert Xpress Flu/RSV, GenMark ePlex respiratory panel, BioFire respiratory panel 2.1 and v1.7, DiaSorin Simplexa COVID-19 Direct, and Hologic Panther Fusion SARS-CoV-2 assays. The Xpert Xpress SARS-CoV-2/Flu/RSV test showed high sensitivity and accuracy for all analytes included in the test. This test will provide a valuable clinical diagnostic and public health solution for detecting and differentiating SARS-CoV-2, influenza A and B virus, and RSV infections during the current respiratory virus season.
引用
收藏
页数:7
相关论文
共 42 条
[1]   Correlation of Chest CT and RT-PCR Testing for Coronavirus Disease 2019 (COVID-19) in China: A Report of 1014 Cases [J].
Ai, Tao ;
Yang, Zhenlu ;
Hou, Hongyan ;
Zhan, Chenao ;
Chen, Chong ;
Lv, Wenzhi ;
Tao, Qian ;
Sun, Ziyong ;
Xia, Liming .
RADIOLOGY, 2020, 296 (02) :E32-E40
[2]   Validation of the Hologic Aptima Unisex and Multitest Specimen Collection Kits Used for Endocervical and Male Urethral Swab Specimens (Aptima Swabs) for Collection of Samples from SARS-CoV-2-Infected Patients [J].
Avaniss-Aghajani, E. ;
Sarkissian, A. ;
Fernando, F. ;
Avaniss-Aghajani, A. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2020, 58 (08)
[3]   Co-infection with SARS-CoV-2 and influenza A virus [J].
Azekawa, Shuhei ;
Namkoong, Ho ;
Mitamura, Keiko ;
Kawaoka, Yoshihiro ;
Saito, Fumitake .
IDCASES, 2020, 20
[4]  
Basu A, 2020, BIORXIV, DOI [10.1101/2020.05.11.089896v1, DOI 10.1101/2020.05.11.089896V1]
[5]  
Bordi L, 2020, J CLIN VIROL, V128, DOI 10.1016/j.jcv.2020.104416
[6]  
CDC, 2020, GUIDE CONSIDERING IN
[7]   Clinical impact of rapid diagnostics using Xpert Flu/RSV™ PCR on antimicrobial stewardship initiatives during influenza season [J].
Chavada, Ruchir ;
Clifford, Liam ;
Weisback, Owen .
INFECTION DISEASE & HEALTH, 2020, 25 (02) :71-76
[8]   Comparison of Two High-Throughput Reverse Transcription-PCR Systems for the Detection of Severe Acute Respiratory Syndrome Coronavirus 2 [J].
Craney, Arryn R. ;
Velu, Priya D. ;
Satlin, Michael J. ;
Fauntleroy, Kathy A. ;
Callan, Katrina ;
Robertson, Amy ;
La Spina, Marisa ;
Lei, Beryl ;
Chen, Anqi ;
Alston, Tricia ;
Rozman, Anna ;
Loda, Massimo ;
Rennert, Hanna ;
Cushing, Melissa ;
Westblade, Lars F. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2020, 58 (08)
[9]   SARS-CoV-2 and influenza virus co-infection [J].
Cuadrado-Payan, Elena ;
Montagud-Marrahi, Enrique ;
Torres-Elorza, Manuel ;
Bodro, Marta ;
Blasco, Miquel ;
Poch, Esteban ;
Soriano, Alex ;
Pineiro, Gaston J. .
LANCET, 2020, 395 (10236) :E84-E84
[10]   A service evaluation of simultaneous near-patient testing for influenza, respiratory syncytial virus, Clostridium difficile and norovirus in a UK district general hospital [J].
Haigh, J. ;
Cutino-Moguel, M-T ;
Wilks, M. ;
Welch, C. A. ;
Melzer, M. .
JOURNAL OF HOSPITAL INFECTION, 2019, 103 (04) :441-446