The Amsterdam Open MRI Collection, a set of multimodal MRI datasets for individual difference analyses

被引:51
作者
Snoek, Lukas [1 ,2 ]
van der Miesen, Maite M. [1 ,3 ]
Beemsterboer, Tinka [1 ,2 ]
van der Leij, Andries [1 ,4 ,5 ]
Eigenhuis, Annemarie [1 ]
Steven Scholte, H. [1 ,2 ,5 ]
机构
[1] Univ Amsterdam, Dept Psychol, Amsterdam, Netherlands
[2] Spinoza Ctr Neuroimaging, Locat Roeterseil & Campus, Amsterdam, Netherlands
[3] Maastricht Univ, Sch Mental Hlth & Neurosci, Dept Anesthesiol, Maastricht, Netherlands
[4] Brainsfirst BV, Amsterdam, Netherlands
[5] Neurensics BV, Amsterdam, Netherlands
关键词
FMRI; SIGNAL; PERSONALITY; VALIDATION; NOISE; SEGMENTATION; REGISTRATION; ACTIVATION; RESPONSES; MOVEMENT;
D O I
10.1038/s41597-021-00870-6
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We present the Amsterdam Open MRI Collection (AOMIC): three datasets with multimodal (3 T) MRI data including structural (T1-weighted), diffusion-weighted, and (resting-state and task-based) functional BOLD MRI data, as well as detailed demographics and psychometric variables from a large set of healthy participants (N = 928, N = 226, and N = 216). Notably, task-based fMRI was collected during various robust paradigms (targeting naturalistic vision, emotion perception, working memory, face perception, cognitive conflict and control, and response inhibition) for which extensively annotated event-files are available. For each dataset and data modality, we provide the data in both raw and preprocessed form (both compliant with the Brain Imaging Data Structure), which were subjected to extensive (automated and manual) quality control. All data is publicly available from the OpenNeuro data sharing platform.
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页数:23
相关论文
共 103 条
  • [1] Machine learning for neuroirnaging with scikit-learn
    Abraham, Alexandre
    Pedregosa, Fabian
    Eickenberg, Michael
    Gervais, Philippe
    Mueller, Andreas
    Kossaifi, Jean
    Gramfort, Alexandre
    Thirion, Bertrand
    Varoquaux, Gael
    [J]. FRONTIERS IN NEUROINFORMATICS, 2014, 8
  • [2] Amthauer R., 2001, INTELLIGENZ STRUKTUR, V2
  • [3] Andersson J.L., 2007, FMRIB technical report TR07JA2, V2, pe21
  • [4] Incorporating outlier detection and replacement into a non-parametric framework for movement and distortion correction of diffusion MR images
    Andersson, Jesper L. R.
    Graham, Mark S.
    Zsoldos, Eniko
    Sotiropoulos, Stamatios N.
    [J]. NEUROIMAGE, 2016, 141 : 556 - 572
  • [5] An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging
    Andersson, Jesper L. R.
    Sotiropoulos, Stamatios N.
    [J]. NEUROIMAGE, 2016, 125 : 1063 - 1078
  • [6] [Anonymous], 1996, PERSOONLIJKHEIDSVRAG
  • [7] Automatic correction of motion artifacts in magnetic resonance images using an entropy focus criterion
    Atkinson, D
    Hill, DLG
    Stoyle, PNR
    Summers, PE
    Keevil, SF
    [J]. IEEE TRANSACTIONS ON MEDICAL IMAGING, 1997, 16 (06) : 903 - 910
  • [8] Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain
    Avants, B. B.
    Epstein, C. L.
    Grossman, M.
    Gee, J. C.
    [J]. MEDICAL IMAGE ANALYSIS, 2008, 12 (01) : 26 - 41
  • [9] A mind-brain-body dataset of MRI, EEG, cognition, emotion, and peripheral physiology in young and old adults
    Babayan, Anahit
    Erbey, Miray
    Kumral, Deniz
    Reinelt, Janis D.
    Reiter, Andrea M. F.
    Roebbig, Josefin
    Schaare, H. Lina
    Uhlig, Marie
    Anwander, Alfred
    Bazin, Pierre-Louis
    Horstmann, Annette
    Lampe, Leonie
    Nikulin, Vadim V.
    Okon-Singer, Hadas
    Preusser, Sven
    Pampel, Andre
    Rohr, Christiane S.
    Sacher, Julia
    Thoene-Otto, Angelika
    Trapp, Sabrina
    Nierhaus, Till
    Altmann, Denise
    Arelin, Katrin
    Bloechl, Maria
    Bongartz, Edith
    Breig, Patric
    Cesnaite, Elena
    Chen, Sufang
    Cozatl, Roberto
    Czerwonatis, Saskia
    Dambrauskaite, Gabriele
    Dreyer, Maria
    Enders, Jessica
    Engelhardt, Melina
    Fischer, Marie Michele
    Forschack, Norman
    Golchert, Johannes
    Golz, Laura
    Guran, C. Alexandrina
    Hedrich, Susanna
    Hentschel, Nicole
    Hoffmann, Daria I.
    Huntenburg, Julia M.
    Jost, Rebecca
    Kosatschek, Anna
    Kunzendorf, Stella
    Lammers, Hannah
    Lauckner, Mark E.
    Mahjoory, Keyvan
    Kanaan, Ahmad S.
    [J]. SCIENTIFIC DATA, 2019, 6 (1)
  • [10] Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction
    Bastiani, Matteo
    Cottaar, Michiel
    Fitzgibbon, Sean P.
    Suri, Sana
    Alfaro-Almagro, Fidel
    Sotiropoulos, Stamatios N.
    Jbabdi, Saad
    Andersson, Jesper L. R.
    [J]. NEUROIMAGE, 2019, 184 : 801 - 812