Ultrasensitivity in signaling cascades revisited: Linking local and global ultrasensitivity estimations

被引:17
作者
Altszyler, Edgar [1 ]
Ventura, Alejandra C. [2 ,3 ]
Colman-Lerner, Alejandro [2 ,3 ]
Chernomoretz, Ariel [4 ,5 ]
机构
[1] Univ Buenos Aires, Dept Comp, Lab Inteligencia Artificial Aplicada, CONICET, Ciudad Univ,Pabellon 1,C1428EHA, Buenos Aires, DF, Argentina
[2] Univ Buenos Aires, IFIBYNE, CONICET, Ciudad Univ,Pabellon 2,C1428EHA, Buenos Aires, DF, Argentina
[3] Univ Buenos Aires, Dept Fisiol Biol Mol & Celular, Fac Ciencias Exactas & Nat, Ciudad Univ,Pabellon 2,C1428EHA, Buenos Aires, DF, Argentina
[4] UBA, Dept Fis, FCEN, IFIBA,CONICET, Ciudad Univ,Pabellon 1,C1428EHA, Buenos Aires, DF, Argentina
[5] Fdn Inst Leloir, Ave Patricias Argentinas 435,C1405BWE, Buenos Aires, DF, Argentina
来源
PLOS ONE | 2017年 / 12卷 / 06期
基金
美国国家卫生研究院;
关键词
PROTEIN-KINASE CASCADES; MULTISITE PHOSPHORYLATION; COVALENT MODIFICATION; SWITCH-LIKE; SEQUESTRATION; BISTABILITY; RESPONSES; FEEDBACK; BIOLOGY; SYSTEMS;
D O I
10.1371/journal.pone.0180083
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Ultrasensitive response motifs, capable of converting graded stimuli into binary responses, are well-conserved in signal transduction networks. Although it has been shown that a cascade arrangement of multiple ultrasensitive modules can enhance the system's ultrasensitivity, how a given combination of layers affects a cascade's ultrasensitivity remains an open question for the general case. Here, we introduce a methodology that allows us to determine the presence of sequestration effects and to quantify the relative contribution of each module to the overall cascade's ultrasensitivity. The proposed analysis framework provides a natural link between global and local ultrasensitivity descriptors and it is particularly well suited to characterize and understand mathematical models used to study real biological systems. As a case study, we have considered three mathematical models introduced by O'Shaughnessy et al. to study a tunable synthetic MAPK cascade, and we show how our methodology can help modelers better understand alternative models.
引用
收藏
页数:18
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