Bacterial community segmentation facilitates the prediction of ecosystem function along the coast of the western Antarctic Peninsula

被引:47
作者
Bowman, Jeff S. [1 ,2 ]
Amaral-Zettler, Linda A. [3 ,4 ]
Rich, Jeremy J. [5 ,6 ]
Luria, Catherine M. [7 ]
Ducklow, Hugh W. [1 ]
机构
[1] Columbia Univ, Lamont Doherty Earth Observ, Div Biol & Paleo Environm, Palisades, NY USA
[2] Scripps Inst Oceanog, Integrat Oceanog Div, La Jolla, CA USA
[3] Marine Biol Lab, Josephine Bay Paul Ctr Comparat Mol Biol & Evolut, 7 MBL St, Woods Hole, MA 02543 USA
[4] Brown Univ, Dept Earth Environm & Planetary Sci, Providence, RI 02912 USA
[5] Univ Maine, Sch Marine Sci, Walpole, ME USA
[6] Univ Maine, Darling Marine Ctr, Walpole, ME 04573 USA
[7] Brown Univ, Dept Ecol & Evolutionary Biol, Providence, RI 02912 USA
基金
美国国家科学基金会;
关键词
NUCLEIC-ACID CONTENT; MARINE BACTERIAL; HETEROTROPHIC BACTERIA; DYNAMICS; WATERS; SUCCESSION; ABUNDANCE; SULFUR; ICE;
D O I
10.1038/ismej.2016.204
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Bacterial community structure can be combined with observations of ecophysiological data to build predictive models of microbial ecosystem function. These models are useful for understanding how function might change in response to a changing environment. Here we use five spring-summer seasons of bacterial community structure and flow cytometry data from a productive coastal site along the western Antarctic Peninsula to construct models of bacterial production (BP), an ecosystem function that heterotrophic bacteria provide. Through a novel application of emergent self-organizing maps we identified eight recurrent modes in the structure of the bacterial community. A model that combined bacterial abundance, mode and the fraction of cells belonging to the high nucleic acid population (fHNA; R-2 = 0.730, P<0.001) best described BP. Abrupt transitions between modes during the 2013-2014 spring-summer season corresponded to rapid shifts in fHNA. We conclude that parameterizing community structure data via segmentation can yield useful insights into microbial ecosystem function and ecosystem processes.
引用
收藏
页码:1460 / 1471
页数:12
相关论文
共 45 条
[11]   Response of a summertime Antarctic marine bacterial community to glucose and ammonium enrichment [J].
Ducklow, Hugh W. ;
Myers, Kristen M. S. ;
Erickson, Matthew ;
Ghiglione, Jean-Francois ;
Murray, Alison E. .
AQUATIC MICROBIAL ECOLOGY, 2011, 64 (03) :205-220
[12]  
Fox J., 2018, An R Companion to Applied Regression
[13]  
Fuhrman J., 1993, OCEANOGRAPHY, V6, P51, DOI [DOI 10.5670/OCEANOG.1993.14, 10.5670/oceanog.1993.14.]
[14]   Microzooplankton grazing along the Western Antarctic Peninsula [J].
Garzio, Lori M. ;
Steinberg, Deborah K. ;
Erickson, Matthew ;
Ducklow, Hugh W. .
AQUATIC MICROBIAL ECOLOGY, 2013, 70 (03) :215-232
[15]   Pronounced summer to winter differences and higher wintertime richness in coastal Antarctic marine bacterioplankton [J].
Ghiglione, J. F. ;
Murray, A. E. .
ENVIRONMENTAL MICROBIOLOGY, 2012, 14 (03) :617-629
[16]   SIZE-SELECTIVE GRAZING ON BACTERIA BY NATURAL ASSEMBLAGES OF ESTUARINE FLAGELLATES AND CILIATES [J].
GONZALEZ, JM ;
SHERR, EB ;
SHERR, BF .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1990, 56 (03) :583-589
[17]   Consumer co-evolution as an important component of the eco-evolutionary feedback [J].
Hiltunen, Teppo ;
Becks, Lutz .
NATURE COMMUNICATIONS, 2014, 5
[18]   Bacterial taxa that limit sulfur flux from the ocean [J].
Howard, Erinn C. ;
Henriksen, James R. ;
Buchan, Alison ;
Reisch, Chris R. ;
Buergmann, Helmut ;
Welsh, Rory ;
Ye, Wenying ;
Gonzalez, Jose M. ;
Mace, Kimberly ;
Joye, Samantha B. ;
Kiene, Ronald P. ;
Whitman, William B. ;
Moran, Mary Ann .
SCIENCE, 2006, 314 (5799) :649-652
[19]   Predation as a shaping force for the phenotypic and genotypic composition of planktonic bacteria [J].
Jürgens, K ;
Matz, C .
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2002, 81 (1-4) :413-434
[20]   A Decadal (2002-2014) Analysis for Dynamics of Heterotrophic Bacteria in an Antarctic Coastal Ecosystem: Variability and Physical and Biogeochemical Forcings [J].
Kim, Hyewon ;
Ducklow, Hugh W. .
FRONTIERS IN MARINE SCIENCE, 2016, 3