Brain Tumor Segmentation Using Multi-Cascaded Convolutional Neural Networks and Conditional Random Field

被引:120
作者
Hu, Kai [1 ,2 ]
Gan, Qinghai [1 ]
Zhang, Yuan [1 ]
Deng, Shuhua [1 ]
Xiao, Fen [1 ]
Huang, Wei [4 ]
Cao, Chunhong [1 ]
Gao, Xieping [1 ,3 ]
机构
[1] Xiangtan Univ, Minist Educ, Key Lab Intelligent Comp & Informat Proc, Xiangtan 411105, Peoples R China
[2] Xiangtan Univ, Postdoctoral Res Stn Mech, Xiangtan 411105, Peoples R China
[3] Xiangnan Univ, Coll Software & Commun Engn, Chenzhou 423043, Peoples R China
[4] First Hosp Changsha, Dept Radiol, Changsha 410005, Hunan, Peoples R China
基金
中国国家自然科学基金;
关键词
Brain tumor segmentation; convolutional neural network; multi-cascaded convolutional neural network; conditional random field; multi-modality; IMAGE SEGMENTATION; MODEL;
D O I
10.1109/ACCESS.2019.2927433
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Accurate segmentation of brain tumor is an indispensable component for cancer diagnosis and treatment. In this paper, we propose a novel brain tumor segmentation method based on multi-cascaded convolutional neural network (MCCNN) and fully connected conditional random fields (CRFs). The segmentation process mainly includes the following two steps. First, we design a multi-cascaded network architecture by combining the intermediate results of several connected components to take the local dependencies of labels into account and make use of multi-scale features for the coarse segmentation. Second, we apply CRFs to consider the spatial contextual information and eliminate some spurious outputs for the fine segmentation. In addition, we use image patches obtained from axial, coronal, and sagittal views to respectively train three segmentation models, and then combine them to obtain the final segmentation result. The validity of the proposed method is evaluated on three publicly available databases. The experimental results show that our method achieves competitive performance compared with the state-of-the-art approaches.
引用
收藏
页码:92615 / 92629
页数:15
相关论文
共 51 条
[31]  
Michal M., 2018, MICCAI BRATS 2018, P314
[32]   3D MRI Brain Tumor Segmentation Using Autoencoder Regularization [J].
Myronenko, Andriy .
BRAINLESION: GLIOMA, MULTIPLE SCLEROSIS, STROKE AND TRAUMATIC BRAIN INJURIES, BRAINLES 2018, PT II, 2019, 11384 :311-320
[33]   New variants of a method of MRI scale standardization [J].
Nyúl, LG ;
Udupa, JK ;
Zhang, X .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2000, 19 (02) :143-150
[34]   Interaction in the segmentation of medical images: A survey [J].
Olabarriaga, SD ;
Smeulders, AWM .
MEDICAL IMAGE ANALYSIS, 2001, 5 (02) :127-142
[35]   Brain Tumor Segmentation Using Convolutional Neural Networks in MRI Images [J].
Pereira, Sergio ;
Pinto, Adriano ;
Alves, Victor ;
Silva, Carlos A. .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2016, 35 (05) :1240-1251
[36]   Brain Tumor Segmentation by Variability Characterization of Tumor Boundaries [J].
Piedra, Edgar A. Rios ;
Ellingson, Benjamin M. ;
Taira, Ricky K. ;
El-Saden, Suzie ;
Bui, Alex A. T. ;
Hsu, William .
BRAINLESION: GLIOMA, MULTIPLE SCLEROSIS, STROKE AND TRAUMATIC BRAIN INJURIES, 2016, 2016, 10154 :206-216
[37]   A brain tumor segmentation framework based on outlier detection [J].
Prastawa, M ;
Bullitt, E ;
Ho, S ;
Gerig, G .
MEDICAL IMAGE ANALYSIS, 2004, 8 (03) :275-283
[38]  
Reza S., 2014, P MICCAI BRATS BRAIN, P27, DOI DOI 10.1109/TMI.2014.2377694
[39]  
Srivastava N, 2014, J MACH LEARN RES, V15, P1929
[40]   Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR [J].
Tustison, Nicholas J. ;
Shrinidhi, K. L. ;
Wintermark, Max ;
Durst, Christopher R. ;
Kandel, Benjamin M. ;
Gee, James C. ;
Grossman, Murray C. ;
Avants, Brian B. .
NEUROINFORMATICS, 2015, 13 (02) :209-225