Structural Analysis of Neutralizing Epitopes of the SARS-CoV-2 Spike to Guide Therapy and Vaccine Design Strategies

被引:50
|
作者
Finkelstein, Maxwell T. [1 ]
Mermelstein, Adam G. [1 ]
Parker Miller, Emma [1 ]
Seth, Paul C. [1 ]
Stancofski, Erik-Stephane D. [1 ]
Fera, Daniela [1 ]
机构
[1] Swarthmore Coll, Dept Chem & Biochem, Swarthmore, PA 19081 USA
来源
VIRUSES-BASEL | 2021年 / 13卷 / 01期
关键词
COVID-19; SARS-CoV-2; coronavirus; spike; neutralizing antibodies; immunogen; RECEPTOR-BINDING DOMAIN; CRYO-EM STRUCTURES; MERS-COV; POTENT NEUTRALIZATION; HIV-1; ENV; ANTIBODY; PROTEIN; RECOGNITION; REVEALS; BROAD;
D O I
10.3390/v13010134
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Coronavirus research has gained tremendous attention because of the COVID-19 pandemic, caused by the novel severe acute respiratory syndrome coronavirus (nCoV or SARS-CoV-2). In this review, we highlight recent studies that provide atomic-resolution structural details important for the development of monoclonal antibodies (mAbs) that can be used therapeutically and prophylactically and for vaccines against SARS-CoV-2. Structural studies with SARS-CoV-2 neutralizing mAbs have revealed a diverse set of binding modes on the spike's receptor-binding domain and N-terminal domain and highlight alternative targets on the spike. We consider this structural work together with mAb effects in vivo to suggest correlations between structure and clinical applications. We also place mAbs against severe acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS) coronaviruses in the context of the SARS-CoV-2 spike to suggest features that may be desirable to design mAbs or vaccines capable of conferring broad protection.
引用
收藏
页数:24
相关论文
共 50 条
  • [1] Vaccine design based on 16 epitopes of SARS-CoV-2 spike protein
    He, Jinlei
    Huang, Fan
    Zhang, Jianhui
    Chen, Qiwei
    Zheng, Zhiwan
    Zhou, Qi
    Chen, Dali
    Li, Jiao
    Chen, Jianping
    JOURNAL OF MEDICAL VIROLOGY, 2021, 93 (04) : 2115 - 2131
  • [2] Potent neutralizing antibodies against multiple epitopes on SARS-CoV-2 spike
    Liu, Lihong
    Wang, Pengfei
    Nair, Manoj S.
    Yu, Jian
    Rapp, Micah
    Wang, Qian
    Luo, Yang
    Chan, Jasper F-W
    Sahi, Vincent
    Figueroa, Amir
    Guo, Xinzheng, V
    Cerutti, Gabriele
    Bimela, Jude
    Gorman, Jason
    Zhou, Tongqing
    Chen, Zhiwei
    Yuen, Kwok-Yung
    Kwong, Peter D.
    Sodroski, Joseph G.
    Yin, Michael T.
    Sheng, Zizhang
    Huang, Yaoxing
    Shapiro, Lawrence
    Ho, David D.
    NATURE, 2020, 584 (7821) : 450 - +
  • [3] Potent neutralizing antibodies against multiple epitopes on SARS-CoV-2 spike
    Lihong Liu
    Pengfei Wang
    Manoj S. Nair
    Jian Yu
    Micah Rapp
    Qian Wang
    Yang Luo
    Jasper F.-W. Chan
    Vincent Sahi
    Amir Figueroa
    Xinzheng V. Guo
    Gabriele Cerutti
    Jude Bimela
    Jason Gorman
    Tongqing Zhou
    Zhiwei Chen
    Kwok-Yung Yuen
    Peter D. Kwong
    Joseph G. Sodroski
    Michael T. Yin
    Zizhang Sheng
    Yaoxing Huang
    Lawrence Shapiro
    David D. Ho
    Nature, 2020, 584 : 450 - 456
  • [4] Protective neutralizing epitopes in SARS-CoV-2
    Liu, Hejun
    Wilson, Ian A.
    IMMUNOLOGICAL REVIEWS, 2022, 310 (01) : 76 - 92
  • [5] A panel of human neutralizing mAbs targeting SARS-CoV-2 spike at multiple epitopes
    Tal Noy-Porat
    Efi Makdasi
    Ron Alcalay
    Adva Mechaly
    Yinon Levy
    Adi Bercovich-Kinori
    Ayelet Zauberman
    Hadas Tamir
    Yfat Yahalom-Ronen
    Ma’ayan Israeli
    Eyal Epstein
    Hagit Achdout
    Sharon Melamed
    Theodor Chitlaru
    Shay Weiss
    Eldar Peretz
    Osnat Rosen
    Nir Paran
    Shmuel Yitzhaki
    Shmuel C. Shapira
    Tomer Israely
    Ohad Mazor
    Ronit Rosenfeld
    Nature Communications, 11
  • [6] A panel of human neutralizing mAbs targeting SARS-CoV-2 spike at multiple epitopes
    Noy-Porat, Tal
    Makdasi, Efi
    Alcalay, Ron
    Mechaly, Adva
    Levy, Yinon
    Bercovich-Kinori, Adi
    Zauberman, Ayelet
    Tamir, Hadas
    Yahalom-Ronen, Yfat
    Israeli, Ma'ayan
    Epstein, Eyal
    Achdout, Hagit
    Melamed, Sharon
    Chitlaru, Theodor
    Weiss, Shay
    Peretz, Eldar
    Rosen, Osnat
    Paran, Nir
    Yitzhaki, Shmuel
    Shapira, Shmuel C.
    Israely, Tomer
    Mazor, Ohad
    Rosenfeld, Ronit
    NATURE COMMUNICATIONS, 2020, 11 (01)
  • [7] Structural basis for SARS-CoV-2 neutralizing antibodies with novel binding epitopes
    Fu, Dan
    Zhang, Guangshun
    Wang, Yuhui
    Zhang, Zheng
    Hu, Hengrui
    Shen, Shu
    Wu, Jun
    Li, Bo
    Li, Xin
    Fang, Yaohui
    Liu, Jia
    Wang, Qiao
    Zhou, Yunjiao
    Wang, Wei
    Li, Yufeng
    Lu, Zhonghua
    Wang, Xiaoxiao
    Nie, Cui
    Tian, Yujie
    Chen, Da
    Wang, Yuan
    Zhou, Xingdong
    Wang, Qisheng
    Yu, Feng
    Zhang, Chen
    Deng, Changjing
    Zhou, Liang
    Guan, Guangkuo
    Shao, Na
    Lou, Zhiyong
    Deng, Fei
    Zhang, Hongkai
    Chen, Xinwen
    Wang, Manli
    Liu, Louis
    Rao, Zihe
    Guo, Yu
    PLOS BIOLOGY, 2021, 19 (05)
  • [8] Mutation profile of SARS-CoV-2 spike protein and identification of potential multiple epitopes within spike protein for vaccine development against SARS-CoV-2
    Paul D.
    Pyne N.
    Paul S.
    VirusDisease, 2021, 32 (4) : 703 - 726
  • [9] Immunoinformatics and Structural Analysis for Identification of Immunodominant Epitopes in SARS-CoV-2 as Potential Vaccine Targets
    Mukherjee, Sumit
    Tworowski, Dmitry
    Detroja, Rajesh
    Mukherjee, Sunanda Biswas
    Frenkel-Morgenstern, Milana
    VACCINES, 2020, 8 (02) : 1 - 17
  • [10] Human neutralizing antibodies to cold linear epitopes and subdomain 1 of the SARS-CoV-2 spike glycoprotein
    Bianchini, Filippo
    Crivelli, Virginia
    Abernathy, Morgan E.
    Guerra, Concetta
    Palus, Martin
    Muri, Jonathan
    Marcotte, Harold
    Piralla, Antonio
    Pedotti, Mattia
    De Gasparo, Raoul
    Simonelli, Luca
    Matkovic, Milos
    Toscano, Chiara
    Biggiogero, Maira
    Calvaruso, Veronica
    Svoboda, Pavel
    Rincon, Tomas Cervantes
    Fava, Tommaso
    Podesvova, Lucie
    Shanbhag, Akanksha A.
    Celoria, Andrea
    Sgrignani, Jacopo
    Stefanik, Michal
    Honig, Vaclav
    Pranclova, Veronika
    Michalcikova, Tereza
    Prochazka, Jan
    Guerrini, Giuditta
    Mehn, Dora
    Clabbattini, Annalisa
    Abolhassani, Hassan
    Jarrossay, David
    Uguccioni, Mariagrazia
    Medaglini, Donata
    Pan-Hammarstroem, Qiang
    Calzolai, Luigi
    Fernandez, Daniel
    Baldanti, Fausto
    Franzetti-Pellanda, Alessandra
    Garzoni, Christian
    Sedlacek, Radislav
    Ruzek, Daniel
    Varani, Luca
    Cavalli, Andrea
    Barnes, Christopher O.
    Robbiani, Davide F.
    SCIENCE IMMUNOLOGY, 2023, 8 (81)