Structure and expression of the TaGW7 in bread wheat (Triticum aestivum L.)

被引:14
作者
Ma, Jian [1 ]
Ding, Puyang [1 ]
Qin, Peng [2 ]
Liu, Ya-Xi [1 ]
Xie, Quan [3 ]
Chen, Guangdeng [4 ]
Li, Wei [5 ]
Jiang, Qiantao [1 ]
Chen, Guoyue [1 ]
Lan, Xiu-Jin [1 ]
Wei, Yu-Ming [1 ]
Liu, Chunji [6 ]
Zheng, You-Liang [1 ]
机构
[1] Sichuan Agr Univ, Triticeae Res Inst, Chengdu 611130, Sichuan, Peoples R China
[2] Yunnan Agr Univ, Coll Agron & Technol, Kunming 650000, Yunnan, Peoples R China
[3] Nanjing Agr Univ, Coll Agr Sci, Natl Key Lab Crop Genet & Germplasm Enhancement, Nanjing 210095, Jiangsu, Peoples R China
[4] Sichuan Agr Univ, Inst Ecol & Environm Sci, Chengdu 611130, Peoples R China
[5] Sichuan Agr Univ, Coll Agron, Chengdu 611130, Peoples R China
[6] CSIRO Agr & Food, 306 Carmody Rd, St Lucia, Qld 4067, Australia
基金
中国国家自然科学基金;
关键词
Wheat; GW7; GL7; Gene structure; Protein structure; Expression pattern; RICE GRAIN WIDTH; NATURAL VARIATION; YIELD; SIZE; WEIGHT; GENOME; SHAPE; QTL; IDENTIFICATION; PROTEINS;
D O I
10.1007/s10725-017-0258-3
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
OsGW7 (also known as OsGL7) is homologous to the Arabidopsis thaliana gene that encodes LONGIFOLIA protein, which regulates cell elongation, and is involved in regulating grain length in rice. However, our knowledge on its ortholog in wheat, TaGW7, is limited. In this study, we identified and mapped TaGW7 in wheat, characterized its nucleotide and protein structures, predicted the cis-elements of its promoter, and analysed its expression patterns. The GW7 orthologs in barley (HvGW7), rice (OsGW7), and Brachypodium distachyon (BdGW7) were also identified for comparative analyses. TaGW7 mapped onto the short arms of group 2 chromosomes (2AS, 2BS, and 2DS). Multiple alignments indicated GW7 possesses five exons and four introns in all but two of the species analysed. An exon-intron junction composed of introns 3-4 and exons 4-5 was highly conserved. GW7 has a conserved domain (DUF 4378) and two neighbouring low complexity regions. GW7 was mainly expressed in wheat spikes and stems, in barley seedling crowns, and in rice anthers and embryo-sacs during early development. Drought and heat significantly increased and decreased GW7 expression in wheat, respectively. In barley, GW7 was significantly down-regulated in paleae and awns but up-regulated in seeds under drought treatment and down-regulated under Fusarium and stem rust inoculation. In rice, OsGW7 expression differed significantly under drought treatments. Collectively, these results provide insights into GW7 structure and expression in wheat, barley and rice. The GW7 sequence structure and expression data are the foundation for manipulating GW7 and uncovering its roles in plants.
引用
收藏
页码:281 / 291
页数:11
相关论文
共 42 条
[1]   Arabidopsis TONNEAU1 proteins are essential for preprophase band formation and interact with centrin [J].
Azimzadeh, Juliette ;
Nacry, Philippe ;
Christodoulidou, Anna ;
Drevensek, Stephanie ;
Camilleri, Christine ;
Amiour, Nardjis ;
Parcy, Francois ;
Pastuglia, Martine ;
Bouchez, David .
PLANT CELL, 2008, 20 (08) :2146-2159
[2]   expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform [J].
Borrill, Philippa ;
Ramirez-Gonzalez, Ricardo ;
Uauy, Cristobal .
PLANT PHYSIOLOGY, 2016, 170 (04) :2172-2186
[3]   Estimating genome conservation between crop and model legume species [J].
Choi, HK ;
Mun, JH ;
Kim, DJ ;
Zhu, HY ;
Baek, JM ;
Mudge, J ;
Roe, B ;
Ellis, N ;
Doyle, J ;
Kiss, GB ;
Young, ND ;
Cook, DR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (43) :15289-15294
[4]   Construction of an integrative linkage map and QTL mapping of grain yield-related traits using three related wheat RIL populations [J].
Cui, Fa ;
Zhao, Chunhua ;
Ding, Anming ;
Li, Jun ;
Wang, Lin ;
Li, Xingfeng ;
Bao, Yinguang ;
Li, Junming ;
Wang, Honggang .
THEORETICAL AND APPLIED GENETICS, 2014, 127 (03) :659-675
[5]   GSDS 2.0: an upgraded gene feature visualization server [J].
Hu, Bo ;
Jin, Jinpu ;
Guo, An-Yuan ;
Zhang, He ;
Luo, Jingchu ;
Gao, Ge .
BIOINFORMATICS, 2015, 31 (08) :1296-1297
[6]   Identification of Novel SNP in Promoter Sequence of TaGW2-6A Associated with Grain Weight and Other Agronomic Traits in Wheat (Triticum aestivum L.) [J].
Jaiswal, Vandana ;
Gahlaut, Vijay ;
Mathur, Saloni ;
Agarwal, Priyanka ;
Khandelwal, Manoj Kumar ;
Khurana, Jitendra Paul ;
Tyagi, Akhilesh Kumar ;
Balyan, Harindra Singh ;
Gupta, Pushpendra Kumar .
PLOS ONE, 2015, 10 (06)
[7]   Characterization of barley Prp1 gene and its expression during seed development and under abiotic stress [J].
Jiang, Qian-Tao ;
Liu, Tao ;
Ma, Jian ;
Wei, Yu-Ming ;
Lu, Zhen-Xiang ;
Lan, Xiu-Jin ;
Dai, Shou-Fen ;
Zheng, You-Liang .
GENETICA, 2011, 139 (10) :1283-1292
[8]   Alternative splicing and evolution: diversification, exon definition and function [J].
Keren, Hadas ;
Lev-Maor, Galit ;
Ast, Gil .
NATURE REVIEWS GENETICS, 2010, 11 (05) :345-355
[9]  
Kumar S, 2016, MOL BIOL EVOL, DOI [10.1093/molbev/msw1054, DOI 10.1093/MOLBEV/MSW1054]
[10]   PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences [J].
Lescot, M ;
Déhais, P ;
Thijs, G ;
Marchal, K ;
Moreau, Y ;
Van de Peer, Y ;
Rouzé, P ;
Rombauts, S .
NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :325-327