A simple model of directional interactions for proteins

被引:15
|
作者
Li, Xiaofei [1 ]
Gunton, J. D. [1 ]
Chakrabarti, A. [2 ]
机构
[1] Lehigh Univ, Dept Phys, Bethlehem, PA 18015 USA
[2] Kansas State Univ, Dept Phys, Manhattan, KS 66506 USA
来源
JOURNAL OF CHEMICAL PHYSICS | 2009年 / 131卷 / 11期
基金
美国国家科学基金会;
关键词
MULTIPLE BONDING SITES; ATTRACTIVE FORCES; PHASE-BEHAVIOR; ASSOCIATING FLUIDS; PATCHY PARTICLES; EQUILIBRIA; MOLECULES;
D O I
10.1063/1.3227041
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We study a simple two patch model of globular protein solutions. The model consists of a hard sphere interaction, together with a weak isotropic attraction, decorated with stronger attractive patch-patch interactions. The isotropic and anisotropic attractions are modeled with square well potentials with an interaction range of 1.2 sigma, where sigma is the hard sphere diameter. We have calculated its phase diagram and found a metastable fluid-fluid phase separation curve. We have also obtained the different stable crystal structures at various temperatures. The orientationally ordered, body-centered crystal (bcc-o) lattice is the crystal structure that has the lowest energy; it is stable at lower temperatures and moderate pressures. The orientationally ordered face-centered crystal (fcc) lattice has a higher energy and becomes stable with respect to bcc-o at high pressures and lower temperatures. Finally, at high temperatures when the entropy effect becomes important, the orientational order is lost and an orientationally disordered fcc lattice becomes stable. (C) 2009 American Institute of Physics. [doi: 10.1063/1.3227041]
引用
收藏
页数:8
相关论文
共 50 条
  • [1] A simple probabilistic model of multibody interactions in proteins
    Johansson, Kristoffer Enoe
    Hamelryck, Thomas
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2013, 81 (08) : 1340 - 1350
  • [2] A SIMPLE EXPERIMENTAL-MODEL FOR HYDROPHOBIC INTERACTIONS IN PROTEINS
    LAWSON, EQ
    SADLER, AJ
    HARMATZ, D
    BRANDAU, DT
    MICANOVIC, R
    MACELROY, RD
    MIDDAUGH, CR
    JOURNAL OF BIOLOGICAL CHEMISTRY, 1984, 259 (05) : 2910 - 2912
  • [3] SIMPLE LATTICE MODEL OF PROTEINS INCORPORATING DIRECTIONAL BONDING AND STRUCTURED SOLVENT
    OTOOLE, EM
    VENKATARAMANI, R
    PANAGIOTOPOULOS, AZ
    AICHE JOURNAL, 1995, 41 (04) : 954 - 958
  • [4] Directional interactions and cooperativity between mechanosensitive membrane proteins
    Haselwandter, Christoph A.
    Phillips, Rob
    EPL, 2013, 101 (06)
  • [5] A lattice model for fluids with directional interactions
    Aranovich, G
    Donohue, P
    Donohue, M
    JOURNAL OF CHEMICAL PHYSICS, 1999, 111 (05): : 2050 - 2059
  • [6] Aggregation of model gels with directional interactions
    Del Gado, E.
    JOURNAL OF PHYSICS-CONDENSED MATTER, 2010, 22 (10)
  • [7] A lattice model for fluids with directional interactions
    Department of Chemical Engineering, Johns Hopkins University, Baltimore, MD 21218, United States
    J Chem Phys, 5 (2050-2059):
  • [8] SIMPLE MODEL FOR STRONG INTERACTIONS
    KRISCH, AD
    PHYSICAL REVIEW B, 1964, 135 (6B) : 1456 - +
  • [9] A simple model for transition interactions with the microtrack model
    Caroselli, J
    Fitzpatrick, J
    Wolf, JK
    ICC 98 - 1998 IEEE INTERNATIONAL CONFERENCE ON COMMUNICATIONS VOLS 1-3, 1998, : 942 - 946
  • [10] Are Proteins Such Unique Polymers? - The Role of Directional Interactions in the Designability of Generalized Heteropolymers
    Cardelli, Chiara
    Bianco, Valentino
    Rovigatti, Lorenzo
    Nerattini, Francesca
    Tubiana, Luca
    Dellago, Christoph
    Coluzza, Ivan
    BIOPHYSICAL JOURNAL, 2018, 114 (03) : 409A - 409A