31P-dephased, 13C-detected REDOR for NMR crystallography at natural isotopic abundance

被引:10
作者
Greenwood, Alexander I. [1 ]
Clay, Mary C. [1 ]
Rienstra, Chad M. [1 ,2 ,3 ]
机构
[1] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[2] Univ Illinois, Dept Biochem, Urbana, IL USA
[3] Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL USA
基金
美国国家卫生研究院;
关键词
Magic-angle spinning; Phosphorus; Phosphoserine; Simulation; Solid-state NMR; SOLID-STATE NMR; ECHO DOUBLE-RESONANCE; CRYSTAL-STRUCTURE PREDICTION; CELL-PENETRATING PEPTIDE; CHEMICAL-SHIFT TENSORS; X-RAY-DIFFRACTION; AMINO-ACIDS; MAGIC-ANGLE; 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE; BISUBSTRATE INHIBITOR;
D O I
10.1016/j.jmr.2017.02.020
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Typically, the process of NMR-based structure determination relies on accurately measuring a large number of internuclear distances to serve as restraints for simulated annealing calculations. In solids, the rotational-echo double-resonance (REDOR) experiment is a widely used approach to determine heteronuclear dipolar couplings corresponding to distances usually in the range of 1.5-8 angstrom. A challenge in the interpretation of REDOR data is the degeneracy of symmetric subunits in an oligomer or equivalent molecules in a crystal lattice, which produce REDOR trajectories that depend explicitly on two or more distances instead of one. This degeneracy cannot be overcome by either spin dilution (for molecules containing P-31, F-19 and other highly abundant nuclei) or selective pulses (in the case where there is chemical shift degeneracy). For small, crystalline molecules, such as phosphoserine, we demonstrate that as many as five inter-molecular distances must be considered to model P-31-dephased REDOR data accurately. We report excellent agreement between simulation and experiment once lattice couplings, P-31 chemical shift anisotropy, and radio-frequency field inhomogeneity are all taken into account. We also discuss the systematic inaccuracies that may result from approximations that consider only the initial slope of the REDOR trajectory and/or that utilize a two- or three-spin system. Furthermore, we demonstrate the applicability of P-31-dephased REDOR for validation or refinement of candidate crystal structures and show that this approach is especially informative for NMR crystallography of P-31-containing molecules. (C) 2017 Elsevier Inc. All rights reserved.
引用
收藏
页码:8 / 17
页数:10
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