Mathematical descriptors of DNA sequences: development and applications

被引:133
作者
Nandy, Ashesh [1 ]
Harle, Marissa [1 ]
Basak, Subhash C. [1 ]
机构
[1] Univ Minnesota, Nat Resources Res Inst, 5013 Miller Trunk Highway, Duluth, MN 55811 USA
关键词
graphical representation; numerical characterization; mathematical descriptors; DNA sequences;
D O I
10.3998/ark.5550190.0007.907
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
Over the last few years several authors have presented various methods to assign mathematical descriptors to DNA sequences in order to quantitatively compare the sequences and determine similarities and dissimilarities between them. The plethora of different methods used have made it necessary to compare them and determine which one(s), if any, best meet the needs required to characterize DNA sequences. With the very rapid rise in available DNA sequence data and the strong need for robust quantitative techniques to determine regions of interest in these sequences, numerical characterization of DNA and RNA sequences will be of great importance in filling a part of this need.
引用
收藏
页码:211 / 238
页数:28
相关论文
共 50 条
  • [21] On property of the invariant of graphical representations of DNA sequences
    Chun-xin Yuan
    Li-wei Liu
    Tian-ming Wang
    Chun Li
    Journal of Mathematical Chemistry, 2008, 43 : 1177 - 1183
  • [22] Three 3D graphical representations of DNA primary sequences based on the classifications of DNA bases and their applications
    Xie, Guosen
    Mo, Zhongxi
    JOURNAL OF THEORETICAL BIOLOGY, 2011, 269 (01) : 123 - 130
  • [23] Non-Degenerate Graphical Representation of DNA Sequences and its Applications to Phylogenetic Analysis
    Yang, Yan
    Zhang, Yingying
    Jia, Meiduo
    Li, Chun
    Meng, Liangyu
    COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING, 2013, 16 (08) : 585 - 589
  • [24] Applications of 2D and 3D-Dynamic Representations of DNA/RNA Sequences for a Description of Genome Sequences of Viruses
    Bielinska-Waz, Dorota
    Waz, Piotr
    Panas, Damian
    COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING, 2022, 25 (03) : 429 - 438
  • [25] Novel Graphical Representation and Numerical Characterization of DNA Sequences
    Li, Chun
    Fei, Wenchao
    Zhao, Yan
    Yu, Xiaoqing
    APPLIED SCIENCES-BASEL, 2016, 6 (03):
  • [26] 3D-dynamic representation of DNA sequences
    Waz, Piotr
    Bielinska-Waz, Dorota
    JOURNAL OF MOLECULAR MODELING, 2014, 20 (03)
  • [27] Similarity Evaluation of DNA Sequences Based on Nucleotides Similarity
    Salem, Heba Al-Shaek
    Nuser, Maryam
    Alsmadi, Izzat
    PROCEEDINGS OF THE 3RD INTERNATIONAL CONFERENCE ON INFORMATION AND COMMUNICATION SYSTEMS (ICICS'12), 2012,
  • [28] A new graphical representation of protein sequences and its applications
    Hou, Wenbing
    Pan, Qiuhui
    He, Mingfeng
    PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2016, 444 : 996 - 1002
  • [29] Cluster Analysis of Coronavirus Sequences using Computational Sequence Descriptors: With Applications to SARS, MERS and SARS-CoV-2 (CoVID-19)
    Vracko, Marjan
    Basak, Subhash C.
    Dey, Tathagata
    Nandy, Ashesh
    CURRENT COMPUTER-AIDED DRUG DESIGN, 2021, 17 (07) : 936 - 945
  • [30] Similarity Analysis of DNA Sequences Based on K-word
    Hu, Yingxin
    Qi, Zhaohui
    Zheng, Lijuan
    Zhou, Wenfeng
    PROCEEDINGS OF 2014 IEEE INTERNATIONAL CONFERENCE ON PROGRESS IN INFORMATICS AND COMPUTING (PIC), 2014, : 621 - 625