Mathematical descriptors of DNA sequences: development and applications

被引：133
作者：
Nandy, Ashesh [1 ]
Harle, Marissa [1 ]
Basak, Subhash C. [1 ]
机构：
[1] Univ Minnesota, Nat Resources Res Inst, 5013 Miller Trunk Highway, Duluth, MN 55811 USA
来源：
ARKIVOC | 2006年
关键词：
graphical representation; numerical characterization; mathematical descriptors; DNA sequences;
D O I：
10.3998/ark.5550190.0007.907
中图分类号：
O62 [有机化学];
学科分类号：
070303 ; 081704 ;
摘要：
Over the last few years several authors have presented various methods to assign mathematical descriptors to DNA sequences in order to quantitatively compare the sequences and determine similarities and dissimilarities between them. The plethora of different methods used have made it necessary to compare them and determine which one(s), if any, best meet the needs required to characterize DNA sequences. With the very rapid rise in available DNA sequence data and the strong need for robust quantitative techniques to determine regions of interest in these sequences, numerical characterization of DNA and RNA sequences will be of great importance in filling a part of this need.
引用
收藏
页码：211 / 238
页数：28
相关论文
共 65 条
[1]  
[Anonymous], [No title captured]
[2]   Analysis of similarity between RNA secondary structures [J].
Bai, FL ;
Zhu, W ;
Wang, TM .
CHEMICAL PHYSICS LETTERS, 2005, 408 (4-6) :258-263
[3]   DETERMINING STRUCTURAL SIMILARITY OF CHEMICALS USING GRAPH-THEORETIC INDEXES [J].
BASAK, SC ;
MAGNUSON, VR ;
NIEMI, GJ ;
REGAL, RR .
DISCRETE APPLIED MATHEMATICS, 1988, 19 (1-3) :17-44
[4]   PREDICTING PROPERTIES OF MOLECULES USING GRAPH INVARIANTS [J].
BASAK, SC ;
NIEMI, GJ ;
VEITH, GD .
JOURNAL OF MATHEMATICAL CHEMISTRY, 1991, 7 (1-4) :243-272
[5]  
BASAK SC, IN PRESS TOPICS HETE, V5
[6]  
BASAK SC, IN PRESS ADV QUANTUM
[7]  
BASAK SC, 2005, C P, V7, P954
[8]  
BASAK SC, 2006, BIOL CONCEPTS TECHNI, P61
[9]   Similarity methods in analog selection, property estimation and clustering of diverse chemicals [J].
Basak, Subhash C. ;
Gute, Brian D. ;
Mills, Denise .
ARKIVOC, 2006, :157-210
[10]   OPTIMAL CHARACTERIZATION OF STRUCTURE FOR PREDICTION OF PROPERTIES [J].
Basak, Subhash C. ;
Niemi, Gerald J. ;
Veith, Gilman D. .
JOURNAL OF MATHEMATICAL CHEMISTRY, 1990, 4 (01) :185-205
1234567