Leukotriene (LT) C-4 and other glutathione conjugates are synthesized intracellularly and then move to the plasma membrane for export. The intracellular proteins that bind these molecules and the significance of these interactions are poorly understood. To identify the binding sites of membrane-associated proteins that recognize these molecules, we utilized photoaffinity probes to label the inner leaflet of erythrocytes. The predominant molecule labeled with S-(p-nitrobenzyl)glutathione-[I-125]4-azidosalicylic acid (PNBG-[I-125]ASA) or LTC4[I-125]4-azidosalicylic acid (LTC4-[I-125]ASA) was 38 kDa, The protein was labeled with PNBG-[I-125]ASA, electroblotted to polyvinylidene difluoride membranes, digested in situ with lysyl endopeptidase, and two radiolabeled peptides isolated by reverse phase-high performance liquid chromatography, These contained an identity of 7/11 with amino acids 119-129, and 11/11 with amino acids 67-77 of human Liver glyceraldehyde-3-phosphate dehydrogenase (GAPDH), respectively. Photoaffinity labeling with PNBG-[I-125]ASA was blocked completely by 100 mu M ATP and greater than 50% with 100 mu M NAD(+). LTC4-[I-125]ASA binding to the NAD(+) site was confirmed by V8 protease digestion of purified GAPDH labeled with LTC4-[I-125]ASA or PNBG-[I-125]ASA, with both labels localized to the 6.8-kDa N-terminal fragment. Photoaffinity labeling of ML-60 cells with (LTC4HI)-I-125-ASA identified GAPDH as the predominant cytoplasmic binding protein in these cells. These data indicate that GAPDH is a membrane-associated and cytoplasmic protein which binds glutathione conjugates including LTC4.