Transcriptional Regulation at DSBs: Mechanisms and Consequences

被引:48
作者
Machour, Feras E. [1 ]
Ayoub, Nabieh [1 ]
机构
[1] Technion Israel Inst Technol, Dept Biol, IL-3200003 Haifa, Israel
基金
以色列科学基金会;
关键词
RNA-POLYMERASE-II; DNA-DAMAGE RESPONSE; DOUBLE-STRAND BREAKS; HISTONE DEACETYLASE INHIBITORS; NEGATIVE ELONGATION-FACTOR; CHROMODOMAIN PROTEIN CDYL; HOMOLOGOUS RECOMBINATION; REPRESSES TRANSCRIPTION; GENOMIC INSTABILITY; REPAIR PATHWAYS;
D O I
10.1016/j.tig.2020.01.001
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Defective double-strand break (DSB) repair leads to genomic instabilities that may augment carcinogenesis. DSBs trigger transient transcriptional silencing in the vicinity of transcriptionally active genes through multilayered processes instigated by Ataxia telangiectasia mutated (ATM), DNA-dependent protein kinase (DNA-PK), and poly-(ADP-ribose) polymerase 1 (PARP1). Novel factors have been identified that ensure DSB-induced silencing via two distinct pathways: direct inhibition of RNA Polymerase II (Pol II) mediated by negative elongation factor (NELF), and histone code editing by CDYL1 and histone deacetylases (HDACs) that catalyze H3K27me3 and erase lysine crotonylation, respectively. Here, we highlight major advances in understanding the mechanisms underlying transcriptional silencing at DSBs, and discuss its functional implications on repair. Furthermore, we discuss consequential links between DSBsilencing factors and carcinogenesis and discuss the potential of exploiting them for targeted cancer therapy.
引用
收藏
页码:981 / 997
页数:17
相关论文
共 163 条
[11]   Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks [J].
Aymard, Francois ;
Bugler, Beatrix ;
Schmidt, Christine K. ;
Guillou, Emmanuelle ;
Caron, Pierre ;
Briois, Sebastien ;
Iacovoni, Jason S. ;
Daburon, Virginie ;
Miller, Kyle M. ;
Jackson, Stephen P. ;
Legube, Gaelle .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2014, 21 (04) :366-U172
[12]   DNA double-strand breaks promote methylation of histone H3 on lysine 9 and transient formation of repressive chromatin [J].
Ayrapetov, Marina K. ;
Gursoy-Yuzugullu, Ozge ;
Xu, Chang ;
Xu, Ye ;
Price, Brendan D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (25) :9169-9174
[13]   Identification of 'erasers' for lysine crotonylated histone marks using a chemical proteomics approach [J].
Bao, Xiucong ;
Wang, Yi ;
Li, Xin ;
Li, Xiao-Meng ;
Liu, Zheng ;
Yang, Tangpo ;
Wong, Chi Fat ;
Zhang, Jiangwen ;
Hao, Quan ;
Li, Xiang David .
ELIFE, 2014, 3
[14]   At the intersection of DNA damage and immune responses [J].
Bednarski, Jeffrey J. ;
Sleckman, Barry P. .
NATURE REVIEWS IMMUNOLOGY, 2019, 19 (04) :231-242
[15]   Site-specific Phosphorylation Dynamics of the Nuclear Proteome during the DNA Damage Response [J].
Bennetzen, Martin V. ;
Larsen, Dorthe Helena ;
Bunkenborg, Jakob ;
Bartek, Jiri ;
Lukas, Jiri ;
Andersen, Jens S. .
MOLECULAR & CELLULAR PROTEOMICS, 2010, 9 (06) :1314-1323
[16]   p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage [J].
Borisova, Marina E. ;
Voigt, Andrea ;
Tollenaere, Maxim A. X. ;
Sahu, Sanjeeb Kumar ;
Juretschke, Thomas ;
Kreim, Nastasja ;
Mailand, Niels ;
Choudhary, Chunaram ;
Bekker-Jensen, Simon ;
Akutsu, Masato ;
Wagner, Sebastian A. ;
Beli, Petra .
NATURE COMMUNICATIONS, 2018, 9
[17]   APRIN is a cell cycle specific BRCA2-interacting protein required for genome integrity and a predictor of outcome after chemotherapy in breast cancer [J].
Brough, Rachel ;
Bajrami, Ilirjana ;
Vatcheva, Radost ;
Natrajan, Rachael ;
Reis-Filho, Jorge S. ;
Lord, Christopher J. ;
Ashworth, Alan .
EMBO JOURNAL, 2012, 31 (05) :1160-1176
[18]   Beyond the Trinity of ATM, ATR, and DNA-PK: Multiple Kinases Shape the DNA Damage Response in Concert With RNA Metabolism [J].
Burger, Kaspar ;
Ketley, Ruth F. ;
Gullerova, Monika .
FRONTIERS IN MOLECULAR BIOSCIENCES, 2019, 6
[19]   Histone modifications predispose genome regions to breakage and translocation [J].
Burman, Bharat ;
Zhang, Zhuzhu Z. ;
Pegoraro, Gianluca ;
Lieb, Jason D. ;
Misteli, Tom .
GENES & DEVELOPMENT, 2015, 29 (13) :1393-1402
[20]   A critical role for topoisomerase IIb and DNA double strand breaks in transcription [J].
Calderwood, Stuart K. .
TRANSCRIPTION-AUSTIN, 2016, 7 (03) :75-83