The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer

被引:522
作者
Pomerantz, Mark M. [1 ]
Ahmadiyeh, Nasim [1 ,2 ]
Jia, Li [3 ]
Herman, Paula [1 ]
Verzi, Michael P. [1 ]
Doddapaneni, Harshavardhan [4 ]
Beckwith, Christine A. [1 ]
Chan, Jennifer A. [5 ]
Hills, Adam [1 ]
Davis, Matt [1 ]
Yao, Keluo [1 ]
Kehoe, Sarah M. [1 ]
Lenz, Heinz-Josef [6 ]
Haiman, Christopher A. [6 ]
Yan, Chunli [3 ]
Henderson, Brian E. [6 ]
Frenkel, Baruch [7 ]
Barretina, Jordi [1 ]
Bass, Adam [1 ]
Tabernero, Josep [8 ]
Baselga, Jose [8 ]
Regan, Meredith M. [9 ]
Manak, J. Robert [4 ]
Shivdasani, Ramesh [1 ]
Coetzee, Gerhard A. [3 ]
Freedman, Matthew L. [1 ,10 ,11 ]
机构
[1] Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02115 USA
[2] Brigham & Womens Hosp, Dept Surg, Boston, MA 02115 USA
[3] USC, Keck Sch Med, Dept Urol, Los Angeles, CA USA
[4] Univ Iowa, Dept Biol, Iowa City, IA 52242 USA
[5] Univ Calgary, Dept Pathol & Lab Med, Calgary, AB T2N 1N4, Canada
[6] Univ So Calif, Keck Sch Med, Dept Prevent Med, Los Angeles, CA 90033 USA
[7] Univ So Calif, Keck Sch Med, Inst Med Genet, Los Angeles, CA 90033 USA
[8] Vall Hebron Univ Hosp, Vall Hebron Inst Oncol, Catalonia, Spain
[9] Dana Farber Canc Inst, Dept Biostat & Computat Biol, Boston, MA 02115 USA
[10] Broad Inst Harvard, Cambridge, MA USA
[11] MIT, Cambridge, MA 02139 USA
基金
美国国家卫生研究院;
关键词
WIDE ASSOCIATION SCAN; CHROMOSOME; 8Q24; BETA-CATENIN; GENOME; ACTIVATION; ENHANCERS; PROSTATE; APC;
D O I
10.1038/ng.403
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
An inherited variant on chromosome 8q24, rs6983267, is significantly associated with cancer pathogenesis. We present evidence that the region harboring this variant is a transcriptional enhancer, that the alleles of rs6983267 differentially bind transcription factor 7-like 2 (TCF7L2) and that the risk region physically interacts with the MYC protooncogene. These data provide strong support for a biological mechanism underlying this non-protein-coding risk variant.
引用
收藏
页码:882 / 884
页数:3
相关论文
共 15 条
[1]  
[Anonymous], CURR PROTOC MOL BIOL
[2]  
Barker N, 2000, ADV CANCER RES, V77, P1
[3]   Linking colorectal cancer to Wnt signaling [J].
Bienz, M ;
Clevers, H .
CELL, 2000, 103 (02) :311-320
[4]   Multiple loci with different cancer specificities within the 8q24 gene desert [J].
Ghoussaini, Maya ;
Song, Honglin ;
Koessler, Thibaud ;
Al Olama, Ali Amin ;
Kote-Jarai, Zsofia ;
Driver, Kristy E. ;
Pooley, Karen A. ;
Ramus, Susan J. ;
Kjaer, Susanne Krueger ;
Hogdall, Estrid ;
DiCioccio, Richard A. ;
Whittemore, Alice S. ;
Gayther, Simon A. ;
Giles, Graham G. ;
Guy, Michelle ;
Edwards, Stephen M. ;
Morrison, Jonathan ;
Donovan, Jenny L. ;
Hamdy, Freddie C. ;
Dearnaley, David P. ;
Ardern-Jones, Audrey T. ;
Hall, Amanda L. ;
O'Brien, Lynne T. ;
Gehr-Swain, Beatrice N. ;
Wilkinson, Rosemary A. ;
Brown, Paul M. ;
Hopper, John L. ;
Neal, David E. ;
Pharoah, Paul D. P. ;
Ponder, Bruce A. J. ;
Eeles, Rosalind A. ;
Easton, Douglas F. ;
Dunning, Alison M. .
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE, 2008, 100 (13) :962-966
[5]   A common genetic risk factor for colorectal and prostate cancer [J].
Haiman, Christopher A. ;
Le Marchand, Loic ;
Yamamato, Jennifer ;
Stram, Daniel O. ;
Sheng, Xin ;
Kolonel, Laurence N. ;
Wu, Anna H. ;
Reich, David ;
Henderson, Brian E. .
NATURE GENETICS, 2007, 39 (08) :954-956
[6]   Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome [J].
Heintzman, Nathaniel D. ;
Stuart, Rhona K. ;
Hon, Gary ;
Fu, Yutao ;
Ching, Christina W. ;
Hawkins, R. David ;
Barrera, Leah O. ;
Van Calcar, Sara ;
Qu, Chunxu ;
Ching, Keith A. ;
Wang, Wei ;
Weng, Zhiping ;
Green, Roland D. ;
Crawford, Gregory E. ;
Ren, Bing .
NATURE GENETICS, 2007, 39 (03) :311-318
[7]   Constitutive transcriptional activation by a beta-catenin-Tcf complex in APC(-/-) colon carcinoma [J].
Korinek, V ;
Barker, N ;
Morin, PJ ;
vanWichen, D ;
deWeger, R ;
Kinzler, KW ;
Vogelstein, B ;
Clevers, H .
SCIENCE, 1997, 275 (5307) :1784-1787
[8]   Activation of beta-catenin-Tcf signaling in colon cancer by mutations in beta-catenin or APC [J].
Morin, PJ ;
Sparks, AB ;
Korinek, V ;
Barker, N ;
Clevers, H ;
Vogelstein, B ;
Kinzler, KW .
SCIENCE, 1997, 275 (5307) :1787-1790
[9]  
Polakis P, 2000, GENE DEV, V14, P1837
[10]   Myc deletion rescues Apc deficiency in the small intestine [J].
Sansom, Owen J. ;
Meniel, Valerie S. ;
Muncan, Vanesa ;
Phesse, Toby J. ;
Wilkins, Julie A. ;
Reed, Karen R. ;
Vass, J. Keith ;
Athineos, Dimitris ;
Clevers, Hans ;
Clarke, Alan R. .
NATURE, 2007, 446 (7136) :676-679